Segmental allotetraploidy generates extensive homoeologous expression rewiring and phenotypic diversity at the population level in rice

Y Sun, Y Wu, C Yang, S Sun, X Lin, L Liu… - Molecular …, 2017 - Wiley Online Library
Allopolyploidization, that is, concomitant merging and doubling of two or more divergent
genomes in a common nucleus/cytoplasm, is known to instantly alter genomewide …

Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies

C Xu, Y Bai, X Lin, N Zhao, L Hu, Z Gong… - Molecular biology …, 2014 - academic.oup.com
Hybridization and polyploidization are prominent processes in plant evolution. Hybrids and
allopolyploids typically exhibit radically altered gene expression patterns relative to their …

Genomic mosaicism due to homoeologous exchange generates extensive phenotypic diversity in nascent allopolyploids

Y Wu, F Lin, Y Zhou, J Wang, S Sun… - National Science …, 2021 - academic.oup.com
Allopolyploidy is an important process in plant speciation, yet newly formed allopolyploid
species typically suffer from extreme genetic bottlenecks. One escape from this impasse …

Extensive changes in gene expression and alternative splicing due to homoeologous exchange in rice segmental allopolyploids

Z Zhang, T Fu, Z Liu, X Wang, H Xun, G Li… - Theoretical and Applied …, 2019 - Springer
Key message We report rampant homoeologous exchanges in progenies of a newly
synthesized rice segmental allotetraploid and demonstrate their consequences to changes …

[HTML][HTML] A genome doubling event reshapes rice morphology and products by modulating chromatin signatures and gene expression profiling

C Zhou, X Liu, X Li, H Zhou, S Wang, Z Yuan, Y Zhang… - Rice, 2021 - Springer
Evolutionarily, polyploidy represents a smart method for adjusting agronomically important
in crops through impacts on genomic abundance and chromatin condensation …

DNA methylation repatterning accompanying hybridization, whole genome doubling and homoeolog exchange in nascent segmental rice allotetraploids

N Li, C Xu, A Zhang, R Lv, X Meng, X Lin… - New …, 2019 - Wiley Online Library
Allopolyploidization, which entails interspecific hybridization and whole genome duplication
(WGD), is associated with emergent genetic and epigenetic instabilities that are thought to …

[HTML][HTML] Aneuploidization under segmental allotetraploidy in rice and its phenotypic manifestation

Y Wu, Y Sun, S Sun, G Li, J Wang, B Wang… - Theoretical and Applied …, 2018 - Springer
Key message We report a repertoire of diverse aneuploids harbored by a newly synthesized
segmental allotetraploid rice population with fully sequenced sub-genomes and …

[HTML][HTML] Rapid and pervasive development-and tissue-specific homeolog expression partitioning in newly formed inter-subspecific rice segmental allotetraploids

L Zhao, L Han, C Xiao, X Lin, C Xu, C Yang - BMC genomics, 2018 - Springer
Background In diverse plant taxa, whole-genome duplication (WGD) events are major
sources of phenotypic novelty. Studies of gene expression in synthetic polyploids have …

Genome evolution in Oryza allopolyploids of various ages: Insights into the process of diploidization

X Zou, Y Du, X Wang, Q Wang, B Zhang… - The Plant …, 2021 - Wiley Online Library
The prevalence and recurrence of whole‐genome duplication in plants and its major role in
evolution have been well recognized. Despite great efforts, many aspects of genome …

[HTML][HTML] Comparative genomic and transcriptomic analysis of tandemly and segmentally duplicated genes in rice

SY Jiang, JM González, S Ramachandran - PLoS One, 2013 - journals.plos.org
Tandem and segmental duplications significantly contribute to gene family expansion and
genome evolution. Genome-wide identification of tandem and segmental genes has been …