A Long‐Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery

H Ashrafi, AM Hulse‐Kemp, F Wang, SS Yang… - The plant …, 2015 - Wiley Online Library
Upland cotton (Gossypium hirsutum L.) has a narrow germplasm base, which constrains
marker development and hampers intraspecific breeding. A pressing need exists for high …

Detection, validation, and application of genotyping‐by‐sequencing based single nucleotide polymorphisms in upland cotton

MS Islam, GN Thyssen, JN Jenkins… - The Plant …, 2015 - Wiley Online Library
The presence of two closely related subgenomes in the allotetraploid Upland cotton,
combined with a narrow genetic base of the cultivated varieties, has hindered the …

SNP Marker Discovery in Pima Cotton (Gossypium barbadense L.) Leaf Transcriptomes

P Kottapalli, M Ulloa, KR Kottapalli… - Genomics …, 2016 - journals.sagepub.com
The objective of this study was to explore the known narrow genetic diversity and discover
single-nucleotide polymorphic (SNP) markers for marker-assisted breeding within Pima …

Transcriptome and Complexity-Reduced, DNA-Based Identification of Intraspecies Single-Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L.

QH Zhu, A Spriggs, JM Taylor… - G3: Genes, Genomes …, 2014 - academic.oup.com
Varietal single nucleotide polymorphisms (SNPs) are the differences within one of the two
subgenomes between different tetraploid cotton varieties and have not been practically used …

[HTML][HTML] Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array

LL Hinze, AM Hulse-Kemp, IW Wilson, QH Zhu… - BMC Plant …, 2017 - Springer
Background Cotton germplasm resources contain beneficial alleles that can be exploited to
develop germplasm adapted to emerging environmental and climate conditions. Accessions …

[HTML][HTML] Progress in genome sequencing will accelerate molecular breeding in cotton (Gossypium spp.)

R Yan, C Liang, Z Meng, W Malik, T Zhu, X Zong… - 3 Biotech, 2016 - Springer
Cotton (Gossypium spp.) is the single most important spinning fiber that has economic
significance worldwide. Cotton is one of the most value-added crops and an excellent model …

[HTML][HTML] Development and mapping of SNP assays in allotetraploid cotton

RL Byers, DB Harker, SM Yourstone… - Theoretical and Applied …, 2012 - Springer
A narrow germplasm base and a complex allotetraploid genome have made the discovery of
single nucleotide polymorphism (SNP) markers difficult in cotton (Gossypium hirsutum). To …

[HTML][HTML] Sampling nucleotide diversity in cotton

A Van Deynze, K Stoffel, M Lee, TA Wilkins, A Kozik… - BMC plant biology, 2009 - Springer
Background Cultivated cotton is an annual fiber crop derived mainly from two perennial
species, Gossypium hirsutum L. or upland cotton, and G. barbadense L., extra long-staple …

COTTONOMICS: a comprehensive cotton multi-omics database

F Dai, J Chen, Z Zhang, F Liu, J Li, T Zhao, Y Hu… - Database, 2022 - academic.oup.com
The rapid advancement of sequencing technology, including next-generation sequencing
(NGS), has greatly improved sequencing efficiency and decreased cost. Consequently …

[HTML][HTML] Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC 1 population between Gossypium hirsutum and G …

Y Yu, D Yuan, S Liang, X Li, X Wang, Z Lin, X Zhang - BMC genomics, 2011 - Springer
Background Cotton, with a large genome, is an important crop throughout the world. A high-
density genetic linkage map is the prerequisite for cotton genetics and breeding. A genetic …