Transposon signatures of allopolyploid genome evolution

AM Session, DS Rokhsar - Nature Communications, 2023 - nature.com
Hybridization brings together chromosome sets from two or more distinct progenitor species.
Genome duplication associated with hybridization, or allopolyploidy, allows these …

[图书][B] Polyploidy and genome evolution

PS Soltis, DE Soltis - 2012 - Springer
Polyploidy (whole-genome duplication; WGD) is common in plants and has long been
considered as both an important speciation mechanism and a crucial component of plant …

Symmetric subgenomes and balanced homoeolog expression stabilize the establishment of allopolyploidy in cyprinid fish

L Ren, X Gao, J Cui, C Zhang, H Dai, M Luo, S He… - BMC biology, 2022 - Springer
Background Interspecific postzygotic reproduction isolation results from large genetic
divergence between the subgenomes of established hybrids. Polyploidization immediately …

homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes

WA Freyman, MG Johnson… - Methods in Ecology and …, 2023 - Wiley Online Library
Organisms such as allopolyploids and F1 hybrids contain multiple distinct subgenomes,
each potentially with its own evolutionary history. These organisms present a challenge for …

Evolutionary origins and dynamics of octoploid strawberry subgenomes revealed by dense targeted capture linkage maps

JA Tennessen, R Govindarajulu… - Genome biology and …, 2014 - academic.oup.com
Whole-genome duplications are radical evolutionary events that have driven speciation and
adaptation in many taxa. Higher-order polyploids have complex histories often including …

Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower

PP Edger, R Smith, MR McKain, AM Cooley… - The Plant …, 2017 - academic.oup.com
Recent studies have shown that one of the parental subgenomes in ancient polyploids is
generally more dominant, having retained more genes and being more highly expressed, a …

Genome expression balance in a triploid trihybrid vertebrate

KE McElroy, RD Denton, J Sharbrough… - Genome Biology and …, 2017 - academic.oup.com
Polyploidy is increasingly recognized as a driver of biological diversity. How and why
polyploidization affects gene expression is critical to understanding the link between ploidy …

[HTML][HTML] “Changing by doubling”, the impact of whole genome duplications in the evolution of eukaryotes

O Jaillon, JM Aury, P Wincker - Comptes …, 2009 - comptes-rendus.academie-sciences …
Species are usually defined by reproductive isolation and are characterized by their gene
repertoire. These two aspects are consequences of events fixed during evolution, including …

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

SP Gordon, B Contreras-Moreira, JJ Levy… - Nature …, 2020 - nature.com
Our understanding of polyploid genome evolution is constrained because we cannot know
the exact founders of a particular polyploid. To differentiate between founder effects and post …

Blueprint for phasing and assembling the genomes of heterozygous polyploids: application to the octoploid genome of strawberry

MA Hardigan, MJ Feldmann, DDA Pincot, RA Famula… - BioRxiv, 2021 - biorxiv.org
The challenge of allelic diversity for assembling haplotypes is exemplified in polyploid
genomes containing homoeologous chromosomes of identical ancestry, and significant …