Transposon signatures of allopolyploid genome evolution
AM Session, DS Rokhsar - Nature Communications, 2023 - nature.com
Hybridization brings together chromosome sets from two or more distinct progenitor species.
Genome duplication associated with hybridization, or allopolyploidy, allows these …
Genome duplication associated with hybridization, or allopolyploidy, allows these …
Symmetric subgenomes and balanced homoeolog expression stabilize the establishment of allopolyploidy in cyprinid fish
L Ren, X Gao, J Cui, C Zhang, H Dai, M Luo, S He… - BMC biology, 2022 - Springer
Background Interspecific postzygotic reproduction isolation results from large genetic
divergence between the subgenomes of established hybrids. Polyploidization immediately …
divergence between the subgenomes of established hybrids. Polyploidization immediately …
homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes
WA Freyman, MG Johnson… - Methods in Ecology and …, 2023 - Wiley Online Library
Organisms such as allopolyploids and F1 hybrids contain multiple distinct subgenomes,
each potentially with its own evolutionary history. These organisms present a challenge for …
each potentially with its own evolutionary history. These organisms present a challenge for …
Evolutionary origins and dynamics of octoploid strawberry subgenomes revealed by dense targeted capture linkage maps
JA Tennessen, R Govindarajulu… - Genome biology and …, 2014 - academic.oup.com
Whole-genome duplications are radical evolutionary events that have driven speciation and
adaptation in many taxa. Higher-order polyploids have complex histories often including …
adaptation in many taxa. Higher-order polyploids have complex histories often including …
Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower
Recent studies have shown that one of the parental subgenomes in ancient polyploids is
generally more dominant, having retained more genes and being more highly expressed, a …
generally more dominant, having retained more genes and being more highly expressed, a …
Genome expression balance in a triploid trihybrid vertebrate
Polyploidy is increasingly recognized as a driver of biological diversity. How and why
polyploidization affects gene expression is critical to understanding the link between ploidy …
polyploidization affects gene expression is critical to understanding the link between ploidy …
[HTML][HTML] “Changing by doubling”, the impact of whole genome duplications in the evolution of eukaryotes
Species are usually defined by reproductive isolation and are characterized by their gene
repertoire. These two aspects are consequences of events fixed during evolution, including …
repertoire. These two aspects are consequences of events fixed during evolution, including …
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors
Our understanding of polyploid genome evolution is constrained because we cannot know
the exact founders of a particular polyploid. To differentiate between founder effects and post …
the exact founders of a particular polyploid. To differentiate between founder effects and post …
Blueprint for phasing and assembling the genomes of heterozygous polyploids: application to the octoploid genome of strawberry
MA Hardigan, MJ Feldmann, DDA Pincot, RA Famula… - BioRxiv, 2021 - biorxiv.org
The challenge of allelic diversity for assembling haplotypes is exemplified in polyploid
genomes containing homoeologous chromosomes of identical ancestry, and significant …
genomes containing homoeologous chromosomes of identical ancestry, and significant …