The low noise limit in gene expression

RD Dar, BS Razooky, LS Weinberger, CD Cox… - PloS one, 2015 - journals.plos.org
Protein noise measurements are increasingly used to elucidate biophysical parameters.
Unfortunately noise analyses are often at odds with directly measured parameters. Here we …

Promoter sequence determines the relationship between expression level and noise

LB Carey, D van Dijk, PMA Sloot, JA Kaandorp… - PLoS …, 2013 - journals.plos.org
The ability of cells to accurately control gene expression levels in response to extracellular
cues is limited by the inherently stochastic nature of transcriptional regulation. A change in …

Careful accounting of extrinsic noise in protein expression reveals correlations among its sources

JA Cole, Z Luthey-Schulten - Physical Review E, 2017 - APS
In order to grow and replicate, living cells must express a diverse array of proteins, but the
process by which proteins are made includes a great deal of inherent randomness …

Teasing apart translational and transcriptional components of stochastic variations in eukaryotic gene expression

R Salari, D Wojtowicz, J Zheng, D Levens, Y Pilpel… - 2012 - journals.plos.org
The intrinsic stochasticity of gene expression leads to cell-to-cell variations, noise, in protein
abundance. Several processes, including transcription, translation, and degradation of …

Transient changes in intercellular protein variability identify sources of noise in gene expression

A Singh - Biophysical Journal, 2014 - cell.com
Protein levels differ considerably between otherwise identical cells, and these differences
significantly affect biological function and phenotype. Previous work implicated various …

Tuning noise in gene expression

S Tyagi - Molecular systems biology, 2015 - embopress.org
The relative contribution of promoter architecture and the associated chromatin environment
in regulating gene expression noise has remained elusive. In their recent work, Arkin …

[HTML][HTML] A common repressor pool results in indeterminacy of extrinsic noise

M Stamatakis, RM Adams, G Balázsi - Chaos: An Interdisciplinary …, 2011 - pubs.aip.org
For just over a decade, stochastic gene expression has been the focus of many
experimental and theoretical studies. It is now widely accepted that noise in gene …

Contribution of RNA polymerase concentration variation to protein expression noise

S Yang, S Kim, Y Rim Lim, C Kim, HJ An, JH Kim… - Nature …, 2014 - nature.com
Cell-to-cell variation in gene expression, or noise, is a general phenomenon observed
within cell populations. Transcription is known to be the key stage of gene expression where …

Genome-wide gene expression noise in Escherichia coli is condition-dependent and determined by propagation of noise through the regulatory network

A Urchueguía, L Galbusera, D Chauvin… - PLoS …, 2021 - journals.plos.org
Although it is well appreciated that gene expression is inherently noisy and that
transcriptional noise is encoded in a promoter's sequence, little is known about the extent to …

Disentangling intrinsic and extrinsic gene expression noise in growing cells

J Lin, A Amir - Physical review letters, 2021 - APS
Gene expression is a stochastic process. Despite the increase of protein numbers in
growing cells, the protein concentrations are often found to be confined within small ranges …