The timing of transcriptional regulation in synthetic gene circuits
Transcription factors and their target promoters are central to synthetic biology. By arranging
these components into novel gene regulatory circuits, synthetic biologists have been able to …
these components into novel gene regulatory circuits, synthetic biologists have been able to …
[HTML][HTML] Tuning the dynamic range of bacterial promoters regulated by ligand-inducible transcription factors
One challenge for synthetic biologists is the predictable tuning of genetic circuit regulatory
components to elicit desired outputs. Gene expression driven by ligand-inducible …
components to elicit desired outputs. Gene expression driven by ligand-inducible …
Retroactivity controls the temporal dynamics of gene transcription
Just like in many engineering systems, impedance-like effects, called retroactivity, arise at
the interconnection of biomolecular circuits, leading to unexpected changes in a circuit's …
the interconnection of biomolecular circuits, leading to unexpected changes in a circuit's …
Characterization of intrinsic properties of promoters
Accurate characterization of promoter behavior is essential for the rational design of
functional synthetic transcription networks such as logic gates and oscillators. However …
functional synthetic transcription networks such as logic gates and oscillators. However …
A synthetic biology approach to understanding cellular information processing
The survival of cells and organisms requires proper responses to environmental signals.
These responses are governed by cellular networks, which serve to process diverse …
These responses are governed by cellular networks, which serve to process diverse …
Rapidly characterizing the fast dynamics of RNA genetic circuitry with cell-free transcription–translation (TX-TL) systems
MK Takahashi, J Chappell, CA Hayes… - ACS synthetic …, 2015 - ACS Publications
RNA regulators are emerging as powerful tools to engineer synthetic genetic networks or
rewire existing ones. A potential strength of RNA networks is that they may be able to …
rewire existing ones. A potential strength of RNA networks is that they may be able to …
Simulation approach for timing analysis of genetic logic circuits
Constructing genetic logic circuits is an application of synthetic biology in which parts of the
DNA of a living cell are engineered to perform a dedicated Boolean function triggered by an …
DNA of a living cell are engineered to perform a dedicated Boolean function triggered by an …
Principles of cell-free genetic circuit assembly
V Noireaux, R Bar-Ziv… - Proceedings of the …, 2003 - National Acad Sciences
Cell-free genetic circuit elements were constructed in a transcription–translation extract. We
engineered transcriptional activation and repression cascades, in which the protein product …
engineered transcriptional activation and repression cascades, in which the protein product …
Growth defects and loss-of-function in synthetic gene circuits
Synthetic gene circuits perturb the physiology of their cellular host. The extra load on
endogenous processes shifts the equilibrium of resource allocation in the host, leading to …
endogenous processes shifts the equilibrium of resource allocation in the host, leading to …
Engineered temperature compensation in a synthetic genetic clock
F Hussain, C Gupta, AJ Hirning, W Ott… - Proceedings of the …, 2014 - National Acad Sciences
Synthetic biology promises to revolutionize biotechnology by providing the means to
reengineer and reprogram cellular regulatory mechanisms. However, synthetic gene circuits …
reengineer and reprogram cellular regulatory mechanisms. However, synthetic gene circuits …