miARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis
E Andrés-León, R Núñez-Torres, AM Rojas - Scientific reports, 2016 - nature.com
Large-scale RNAseq has substantially changed the transcriptomics field, as it enables an
unprecedented amount of high resolution data to be acquired. However, the analysis of …
unprecedented amount of high resolution data to be acquired. However, the analysis of …
QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing
Background Genome-wide miRNA expression data can be used to study miRNA
dysregulation comprehensively. Although many open-source tools for microRNA (miRNA) …
dysregulation comprehensively. Although many open-source tools for microRNA (miRNA) …
omiRas: a Web server for differential expression analysis of miRNAs derived from small RNA-Seq data
Small RNA deep sequencing is widely used to characterize non-coding RNAs (ncRNAs)
differentially expressed between two conditions, eg healthy and diseased individuals and to …
differentially expressed between two conditions, eg healthy and diseased individuals and to …
Decreasing miRNA sequencing bias using a single adapter and circularization approach
S Barberán-Soler, JM Vo, RE Hogans, A Dallas… - Genome biology, 2018 - Springer
The ability to accurately quantify all the microRNAs (miRNAs) in a sample is important for
understanding miRNA biology and for development of new biomarkers and therapeutic …
understanding miRNA biology and for development of new biomarkers and therapeutic …
The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs
Motivation RNA interference, a highly conserved regulatory mechanism, is mediated via
small RNAs (sRNA). Recent technical advances enabled the analysis of larger, complex …
small RNAs (sRNA). Recent technical advances enabled the analysis of larger, complex …
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API
Motivation MicroRNAs (miRNAs) are small RNA molecules (∼ 22 nucleotide long) involved
in post-transcriptional gene regulation. Advances in high-throughput sequencing …
in post-transcriptional gene regulation. Advances in high-throughput sequencing …
miRmine: a database of human miRNA expression profiles
Motivation MicroRNAs (miRNAs) are small non-coding RNAs that are involved in post-
transcriptional regulation of gene expression. In this high-throughput sequencing era, a …
transcriptional regulation of gene expression. In this high-throughput sequencing era, a …
MiRGator v3. 0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting
Biogenesis and molecular function are two key subjects in the field of microRNA (miRNA)
research. Deep sequencing has become the principal technique in cataloging of miRNA …
research. Deep sequencing has become the principal technique in cataloging of miRNA …
Next generation sequencing of miRNAs–strategies, resources and methods
S Motameny, S Wolters, P Nürnberg, B Schumacher - Genes, 2010 - mdpi.com
miRNAs constitute a family of small RNA species that have been demonstrated to play a
central role in regulating gene expression in many organisms. With the advent of next …
central role in regulating gene expression in many organisms. With the advent of next …
circRIP: an accurate tool for identifying circRNA–RBP interactions
X Dong, K Chen, W Chen, J Wang… - Briefings in …, 2022 - academic.oup.com
Circular ribonucleic acids (RNAs)(circRNAs) are formed by covalently linking the
downstream splice donor and the upstream splice acceptor. One of the most important …
downstream splice donor and the upstream splice acceptor. One of the most important …