MCQTL: multi-allelic QTL mapping in multi-cross design

MF Jourjon, S Jasson, J Marcel, B Ngom… - …, 2005 - academic.oup.com
The aim of the MCQTL software package is to perform QTL mapping in multi-cross designs.
It allows the analysis of the usual populations derived from inbred lines and can link the …

[HTML][HTML] Linear models for joint association and linkage QTL mapping

A Legarra, RL Fernando - Genetics Selection Evolution, 2009 - Springer
Background Populational linkage disequilibrium and within-family linkage are commonly
used for QTL mapping and marker assisted selection. The combination of both results in …

Qxpak: a versatile mixed model application for genetical genomics and QTL analyses

M Pérez-Enciso, I Misztal - Bioinformatics, 2004 - academic.oup.com
Motivation: Current methodology and software for quantitative trait loci (QTL) analyses do
not use all available information and are inadequate to deal with the huge amount of QTL …

[HTML][HTML] PLABQTL: a program for composite interval mapping of QTL

HF Utz, AE Melchinger - J Quant Trait Loci, 1996 - wheat.pw.usda.gov
PLABQTL is a new software package, written for routine QTL analysis in PLant Breeding
And Biology, as indicated by the acronym. Its main purpose is to localize and characterize …

[HTML][HTML] Mixed model approaches for the identification of QTLs within a maize hybrid breeding program

FA Van Eeuwijk, M Boer, LR Totir, M Bink… - Theoretical and Applied …, 2010 - Springer
Two outlines for mixed model based approaches to quantitative trait locus (QTL) mapping in
existing maize hybrid selection programs are presented: a restricted maximum likelihood …

[图书][B] A Guide to QTL Mapping with R/qtl

KW Broman, S Sen - 2009 - Springer
QTL are quantitative trait loci: genetic loci that contribute to variation in a quantitative trait.
QTL mapping is the effort to identify QTL through an experimental cross. In this book, we …

QGene 4.0, an extensible Java QTL-analysis platform

R Joehanes, JC Nelson - Bioinformatics, 2008 - academic.oup.com
Of many statistical methods developed to date for quantitative trait locus (QTL) analysis, only
a limited subset are available in public software allowing their exploration, comparison and …

Quantitative Trait Loci Mapping in F2 Crosses Between Outbred Lines

M Pérez-Enciso, L Varona - Genetics, 2000 - academic.oup.com
We develop a mixed-model approach for QTL analysis in crosses between outbred lines that
allows for QTL segregation within lines as well as for differences in mean QTL effects …

Power of tests for QTL detection using replicated progenies derived from a diallel cross

A Rebai, B Goffinet - Theoretical and Applied Genetics, 1993 - Springer
In crop species, most QTL (quantitative trait loci) mapping strategies use segregating
populations derived from an initial cross between two lines. However, schemes including …

QTL Express: mapping quantitative trait loci in simple and complex pedigrees

G Seaton, CS Haley, SA Knott, M Kearsey… - …, 2002 - academic.oup.com
QTL Express is the first application for Quantitative Trait Locus (QTL) mapping in outbred
populations with a web-based user interface. User input of three files containing a marker …