Identification and Properties of 1,119 Candidate LincRNA Loci in the Drosophila melanogaster Genome

RS Young, AC Marques, C Tibbit… - Genome biology and …, 2012 - academic.oup.com
The functional repertoire of long intergenic noncoding RNA (lincRNA) molecules has begun
to be elucidated in mammals. Determining the biological relevance and potential gene …

[HTML][HTML] Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution

I Ulitsky, A Shkumatava, CH Jan, H Sive, DP Bartel - Cell, 2011 - cell.com
Thousands of long intervening noncoding RNAs (lincRNAs) have been identified in
mammals. To better understand the evolution and functions of these enigmatic RNAs, we …

[HTML][HTML] lincRNAs: genomics, evolution, and mechanisms

I Ulitsky, DP Bartel - Cell, 2013 - cell.com
Long intervening noncoding RNAs (lincRNAs) are transcribed from thousands of loci in
mammalian genomes and might play widespread roles in gene regulation and other cellular …

The vast, conserved mammalian lincRNome

D Managadze, AE Lobkovsky, YI Wolf… - PLoS computational …, 2013 - journals.plos.org
We compare the sets of experimentally validated long intergenic non-coding (linc) RNAs
from human and mouse and apply a maximum likelihood approach to estimate the total …

Genome-wide identification and developmental expression profiling of long noncoding RNAs during Drosophila metamorphosis

B Chen, Y Zhang, X Zhang, S Jia, S Chen, L Kang - Scientific reports, 2016 - nature.com
An increasing number of long noncoding RNAs (lncRNAs) have been discovered with the
recent advances in RNA-sequencing technologies. lncRNAs play key roles across diverse …

Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs

J Chen, AA Shishkin, X Zhu, S Kadri, I Maza… - Genome biology, 2016 - Springer
Background Recent advances in transcriptome sequencing have enabled the discovery of
thousands of long non-coding RNAs (lncRNAs) across many species. Though several …

Conserved introns reveal novel transcripts in Drosophila melanogaster

M Hiller, S Findeiß, S Lein, M Marz, C Nickel… - Genome …, 2009 - genome.cshlp.org
Noncoding RNAs that are—like mRNAs—spliced, capped, and polyadenylated have
important functions in cellular processes. The inventory of these mRNA-like noncoding …

Comprehensive characterization of 10,571 mouse large intergenic noncoding RNAs from whole transcriptome sequencing

H Luo, S Sun, P Li, D Bu, H Cao, Y Zhao - PloS one, 2013 - journals.plos.org
Large intergenic noncoding RNAs (lincRNAs) have been recognized in recent years to
constitute a significant portion of the mammalian transcriptome, yet their biological functions …

Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals

S Washietl, M Kellis, M Garber - Genome research, 2014 - genome.cshlp.org
Long intergenic noncoding RNAs (lincRNAs) play diverse regulatory roles in human
development and disease, but little is known about their evolutionary history and constraint …

Epigenomic footprints across 111 reference epigenomes reveal tissue-specific epigenetic regulation of lincRNAs

V Amin, RA Harris, V Onuchic, AR Jackson… - Nature …, 2015 - nature.com
Tissue-specific expression of lincRNAs suggests developmental and cell-type-specific
functions, yet tissue specificity was established for only a small fraction of lincRNAs. Here, by …