[HTML][HTML] Common and phylogenetically widespread coding for peptides by bacterial small RNAs
RC Friedman, S Kalkhof, O Doppelt-Azeroual… - BMC genomics, 2017 - Springer
Abstract Background While eukaryotic noncoding RNAs have recently received intense
scrutiny, it is becoming clear that bacterial transcription is at least as pervasive. Bacterial …
scrutiny, it is becoming clear that bacterial transcription is at least as pervasive. Bacterial …
Genome-wide analyses in bacteria show small-RNA enrichment for long and conserved intergenic regions
Interest in finding small RNAs (sRNAs) in bacteria has significantly increased in recent years
due to their regulatory functions. Development of high-throughput methods and more …
due to their regulatory functions. Development of high-throughput methods and more …
[HTML][HTML] Small RNAs beyond model organisms: have we only scratched the surface?
E Boutet, S Djerroud, J Perreault - International Journal of Molecular …, 2022 - mdpi.com
Small RNAs (sRNAs) are essential regulators in the adaptation of bacteria to environmental
changes and act by binding targeted mRNAs through base complementarity. Approximately …
changes and act by binding targeted mRNAs through base complementarity. Approximately …
Identification of small RNAs in diverse bacterial species
Small, non-coding bacterial RNAs (sRNAs) have been shown to regulate a plethora of
biological processes. Up until recently, most sRNAs had been identified and characterized …
biological processes. Up until recently, most sRNAs had been identified and characterized …
Comparative genomics boosts target prediction for bacterial small RNAs
Small RNAs (sRNAs) constitute a large and heterogeneous class of bacterial gene
expression regulators. Much like eukaryotic microRNAs, these sRNAs typically target …
expression regulators. Much like eukaryotic microRNAs, these sRNAs typically target …
Accelerating discovery and functional analysis of small RNAs with new technologies
L Barquist, J Vogel - Annual review of genetics, 2015 - annualreviews.org
Over the past decade, bacterial small RNAs (sRNAs) have gone from a biological curiosity to
being recognized as a major class of regulatory molecules. High-throughput methods for …
being recognized as a major class of regulatory molecules. High-throughput methods for …
[HTML][HTML] Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli
A Shinhara, M Matsui, K Hiraoka, W Nomura, R Hirano… - BMC genomics, 2011 - Springer
Abstract Background In Escherichia coli, approximately 100 regulatory small RNAs (sRNAs)
have been identified experimentally and many more have been predicted by various …
have been identified experimentally and many more have been predicted by various …
Target identification of small noncoding RNAs in bacteria
J Vogel, EGH Wagner - Current opinion in microbiology, 2007 - Elsevier
Small noncoding RNAs have been discovered at a staggering rate in Escherichia coli and
many other bacteria. Most of the sRNAs of known function regulate gene expression by …
many other bacteria. Most of the sRNAs of known function regulate gene expression by …
[HTML][HTML] Prediction of bacterial small RNAs in the RsmA (CsrA) and ToxT pathways: a machine learning approach
CT Fakhry, P Kulkarni, P Chen, R Kulkarni… - BMC genomics, 2017 - Springer
Abstract Background Small RNAs (sRNAs) constitute an important class of post-
transcriptional regulators that control critical cellular processes in bacteria. Recent research …
transcriptional regulators that control critical cellular processes in bacteria. Recent research …
APERO: a genome-wide approach for identifying bacterial small RNAs from RNA-Seq data
Small non-coding RNAs (sRNAs) regulate numerous cellular processes in all domains of
life. Several approaches have been developed to identify them from RNA-seq data, which …
life. Several approaches have been developed to identify them from RNA-seq data, which …