[HTML][HTML] Sub-nucleosomal genome structure reveals distinct nucleosome folding motifs

M Ohno, T Ando, DG Priest, V Kumar, Y Yoshida… - Cell, 2019 - cell.com
Elucidating the global and local rules that govern genome-wide, hierarchical chromatin
architecture remains a critical challenge. Current high-throughput chromosome …

A structural perspective on the where, how, why, and what of nucleosome positioning

G Arya, A Maitra, SA Grigoryev - Journal of Biomolecular Structure …, 2010 - Taylor & Francis
The DNA in eukaryotic chromatin is packed by histones into arrays of repeating units called
nucleosomes. Each nucleosome contains a nucleosome core, where the DNA is wrapped …

Mechanisms underlying nucleosome positioning in vivo

AL Hughes, OJ Rando - Annual review of biophysics, 2014 - annualreviews.org
It has been some 40 years since repeating subunits in eukaryotic chromatin, initially termed
“nu bodies,” were described. Four decades of study have characterized the structural …

Genome-wide nucleosome specificity and directionality of chromatin remodelers

K Yen, V Vinayachandran, K Batta, RT Koerber… - Cell, 2012 - cell.com
How chromatin remodelers cooperate to organize nucleosomes around the start and end of
genes is not known. We determined the genome-wide binding of remodeler complexes …

Beads on a string—nucleosome array arrangements and folding of the chromatin fiber

S Baldi, P Korber, PB Becker - Nature structural & molecular biology, 2020 - nature.com
Understanding how the genome is structurally organized as chromatin is essential for
understanding its function. Here, we review recent developments that allowed the …

[HTML][HTML] Genome-wide “re”-modeling of nucleosome positions

R Sadeh, CD Allis - Cell, 2011 - cell.com
Two recent studies mapped nucleosomes across the yeast and human genomes, teasing
apart the relative contributions of DNA sequence and chromatin remodelers to nucleosome …

A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern

AL Hughes, Y Jin, OJ Rando, K Struhl - Molecular cell, 2012 - cell.com
Although the genomic pattern of nucleosome positioning is broadly conserved, quantitative
aspects vary over evolutionary timescales. We identify the cis and trans determinants of …

Nucleosome positioning and spacing: from mechanism to function

AK Singh, F Mueller-Planitz - Journal of Molecular Biology, 2021 - Elsevier
Eukaryotes associate their genomes with histone proteins, forming nucleosome particles.
Nucleosomes regulate and protect the genetic information. They often assemble into evenly …

[HTML][HTML] The nucleosome: from genomic organization to genomic regulation

S Khorasanizadeh - Cell, 2004 - cell.com
Electron micrographs first confirmed that the eukaryotic genome is organized into repeating
disk-shaped nucleosomal units composed of histones and their associated DNA. Those …

A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription

H van Bakel, K Tsui, M Gebbia, S Mnaimneh… - PLoS …, 2013 - journals.plos.org
Nucleosomes in all eukaryotes examined to date adopt a characteristic architecture within
genes and play fundamental roles in regulating transcription, yet the identity and precise …