QurvE: user-friendly software for the analysis of biological growth and fluorescence data
The study of growth (of cells, organ-isms or populations) is inherent to all biological
disciplines. The fundamental properties of a biological system or the physiological effects of …
disciplines. The fundamental properties of a biological system or the physiological effects of …
Software tools for single-cell tracking and quantification of cellular and molecular properties
O Hilsenbeck, M Schwarzfischer, S Skylaki… - Nature …, 2016 - nature.com
Figure 1 Continuous single-cell quantification with tTt and qTfy.(a) Iterative image analysis
workflow of tTt: graphical overview of raw data for inspection and loading only of relevant …
workflow of tTt: graphical overview of raw data for inspection and loading only of relevant …
Measuring calcium signaling using genetically targetable fluorescent indicators
AE Palmer, RY Tsien - Nature protocols, 2006 - nature.com
Genetically encoded Ca2+ indicators allow researchers to quantitatively measure Ca2+
dynamics in a variety of experimental systems. This protocol summarizes the indicators that …
dynamics in a variety of experimental systems. This protocol summarizes the indicators that …
An unbiased metric of antiproliferative drug effect in vitro
In vitro cell proliferation assays are widely used in pharmacology, molecular biology, and
drug discovery. Using theoretical modeling and experimentation, we show that current …
drug discovery. Using theoretical modeling and experimentation, we show that current …
Robust research needs many lines of evidence
MR Munafò, G Davey Smith - 2018 - nature.com
Several studies across many fields estimate that only around 40% of published findings can
be replicated reliably. Various funders and communities are promoting ways for …
be replicated reliably. Various funders and communities are promoting ways for …
Metabolic profiling on the right path
In the post-genomics era, high-throughput techniques for monitoring RNA1 and protein2
levels are well on their way to becoming mainstream tools for monitoring global cell …
levels are well on their way to becoming mainstream tools for monitoring global cell …
Microarrays--guilt by association
J Quackenbush - Science, 2003 - science.org
Single-molecule methods (8) overcome the latter difficulty. Like an orchestra, a molecular
ensemble needs to be synchronized for the outcome to be comprehensible. In contrast, a …
ensemble needs to be synchronized for the outcome to be comprehensible. In contrast, a …
FPbase: a community-editable fluorescent protein database
TJ Lambert - Nature methods, 2019 - nature.com
To the Editor—The cloning and subsequent engineering of fluorescent proteins (FPs) has
revolutionized methods in biological research1, 2. There are now thousands of FPs …
revolutionized methods in biological research1, 2. There are now thousands of FPs …
Nextflow enables reproducible computational workflows
P Di Tommaso, M Chatzou, EW Floden, PP Barja… - Nature …, 2017 - nature.com
The increasing complexity of readouts for omics analyses goes hand-in-hand with concerns
about the reproducibility of experiments that analyze'big data'1, 2, 3. When analyzing very …
about the reproducibility of experiments that analyze'big data'1, 2, 3. When analyzing very …
An “Electronic Fluorescent Pictograph” browser for exploring and analyzing large-scale biological data sets
Background The exploration of microarray data and data from other high-throughput projects
for hypothesis generation has become a vital aspect of post-genomic research. For the non …
for hypothesis generation has become a vital aspect of post-genomic research. For the non …