agriGO v2. 0: a GO analysis toolkit for the agricultural community, 2017 update
T Tian, Y Liu, H Yan, Q You, X Yi, Z Du… - Nucleic acids …, 2017 - academic.oup.com
The agriGO platform, which has been serving the scientific community for> 10 years,
specifically focuses on gene ontology (GO) enrichment analyses of plant and agricultural …
specifically focuses on gene ontology (GO) enrichment analyses of plant and agricultural …
PlantGSEA: a gene set enrichment analysis toolkit for plant community
X Yi, Z Du, Z Su - Nucleic acids research, 2013 - academic.oup.com
Abstract Gene Set Enrichment Analysis (GSEA) is a powerful method for interpreting
biological meaning of a list of genes by computing the overlaps with various previously …
biological meaning of a list of genes by computing the overlaps with various previously …
GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis
Q Zheng, XJ Wang - Nucleic acids research, 2008 - academic.oup.com
Gene Ontology (GO) analysis has become a commonly used approach for functional studies
of large-scale genomic or transcriptomic data. Although there have been a lot of software …
of large-scale genomic or transcriptomic data. Although there have been a lot of software …
GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
Background Functional enrichment of genes and pathways based on Gene Ontology (GO)
has been widely used to describe the results of various-omics analyses. GO terms …
has been widely used to describe the results of various-omics analyses. GO terms …
[HTML][HTML] GOATOOLS: A Python library for Gene Ontology analyses
The biological interpretation of gene lists with interesting shared properties, such as up-or
down-regulation in a particular experiment, is typically accomplished using gene ontology …
down-regulation in a particular experiment, is typically accomplished using gene ontology …
A simple protocol for informative visualization of enriched gene ontology terms
In genome-scale datasets, Gene Ontology (GO) enrichment is a common analysis to
highlight functions over-represented or under-represented in a subset of differentially …
highlight functions over-represented or under-represented in a subset of differentially …
WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update
J Ye, Y Zhang, H Cui, J Liu, Y Wu, Y Cheng… - Nucleic acids …, 2018 - academic.oup.com
Abstract WEGO (Web Gene Ontology Annotation Plot), created in 2006, is a simple but
useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results …
useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results …
GOnet: a tool for interactive Gene Ontology analysis
M Pomaznoy, B Ha, B Peters - BMC bioinformatics, 2018 - Springer
Background Biological interpretation of gene/protein lists resulting from-omics experiments
can be a complex task. A common approach consists of reviewing Gene Ontology (GO) …
can be a complex task. A common approach consists of reviewing Gene Ontology (GO) …
GO Trimming: Systematically reducing redundancy in large Gene Ontology datasets
Background The increased accessibility of gene expression tools has enabled a wide
variety of experiments utilizing transcriptomic analyses. As these tools increase in …
variety of experiments utilizing transcriptomic analyses. As these tools increase in …
REVIGO summarizes and visualizes long lists of gene ontology terms
Outcomes of high-throughput biological experiments are typically interpreted by statistical
testing for enriched gene functional categories defined by the Gene Ontology (GO). The …
testing for enriched gene functional categories defined by the Gene Ontology (GO). The …