Homoeolog expression bias in allopolyploid oleaginous marine diatom Fistulifera solaris

T Nomaguchi, Y Maeda, T Yoshino, T Asahi, L Tirichine… - BMC genomics, 2018 - Springer
Background Allopolyploidy is a genomic structure wherein two or more sets of chromosomes
derived from divergent parental species coexist within an organism. It is a prevalent genomic …

Chromosome-Scale Genome Assembly of the Marine Oleaginous Diatom Fistulifera solaris

Y Maeda, R Kobayashi, K Watanabe, T Yoshino… - Marine …, 2022 - Springer
Microalgae including diatoms are of interest for environmentally friendly manufacturing such
as production of biofuels, chemicals, and materials. The highly oil-accumulating marine …

Oil Accumulation by the Oleaginous Diatom Fistulifera solaris as Revealed by the Genome and Transcriptome

T Tanaka, Y Maeda, A Veluchamy, M Tanaka… - The Plant …, 2015 - academic.oup.com
Oleaginous photosynthetic organisms such as microalgae are promising sources for biofuel
production through the generation of carbon-neutral sustainable energy. However, the …

Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms

P Bulankova, M Sekulić, D Jallet, C Nef… - Current Biology, 2021 - cell.com
Diatoms, an evolutionarily successful group of microalgae, display high levels of
intraspecific genetic variability in natural populations. However, the contribution of various …

The transcriptome of the novel dinoflagellate Oxyrrhis marina (Alveolata: Dinophyceae): response to salinity examined by 454 sequencing

CD Lowe, LV Mello, N Samatar, LE Martin… - BMC genomics, 2011 - Springer
Abstract Background The heterotrophic dinoflagellate Oxyrrhis marina is increasingly
studied in experimental, ecological and evolutionary contexts. Its basal phylogenetic …

Evidence that inconsistent gene prediction can mislead analysis of dinoflagellate genomes

Y Chen, RA González‐Pech, TG Stephens… - Journal of …, 2020 - Wiley Online Library
Comparative algal genomics often relies on predicted genes from de novo assembled
genomes. However, the artifacts introduced by different gene‐prediction approaches, and …

Foreign gene recruitment to the fatty acid biosynthesis pathway in diatoms

CX Chan, FL Baglivi, CE Jenkins… - Mobile Genetic …, 2013 - Taylor & Francis
Diatoms are highly successful marine and freshwater algae that contribute up to 20% of
global carbon fixation. These species are leading candidates for biofuel production owing to …

Genomes Vary in Size and Spatial Patterns Within Chimeric Blades of Porphyra spp.

E Varela-Álvarez, J Loureiro, PG Meirmans… - Frontiers in Marine …, 2021 - frontiersin.org
Genome size variation is of crucial biological importance, however variation in genome
sizes within a single individual/organism is rarely reported except for some species groups …

Re-examination of two diatom reference genomes using long-read sequencing

GV Filloramo, BA Curtis, E Blanche, JM Archibald - BMC genomics, 2021 - Springer
Abstract Background The marine diatoms Thalassiosira pseudonana and Phaeodactylum
tricornutum are valuable model organisms for exploring the evolution, diversity and ecology …

Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype

JC Traller, SJ Cokus, DA Lopez, O Gaidarenko… - Biotechnology for …, 2016 - Springer
Background Improvement in the performance of eukaryotic microalgae for biofuel and
bioproduct production is largely dependent on characterization of metabolic mechanisms …