[HTML][HTML] Conserved and divergent gene regulatory programs of the mammalian neocortex

NR Zemke, EJ Armand, W Wang, S Lee, J Zhou, YE Li… - Nature, 2023 - nature.com
Divergence of cis-regulatory elements drives species-specific traits, but how this manifests in
the evolution of the neocortex at the molecular and cellular level remains unclear. Here we …

An atlas of gene regulatory elements in adult mouse cerebrum

YE Li, S Preissl, X Hou, Z Zhang, K Zhang, Y Qiu… - Nature, 2021 - nature.com
The mammalian cerebrum performs high-level sensory perception, motor control and
cognitive functions through highly specialized cortical and subcortical structures. Recent …

Epigenomic annotation of gene regulatory alterations during evolution of the primate brain

MW Vermunt, SC Tan, B Castelijns, G Geeven… - Nature …, 2016 - nature.com
Although genome sequencing has identified numerous noncoding alterations between
primate species, which of those are regulatory and potentially relevant to the evolution of the …

An anatomically comprehensive atlas of the adult human brain transcriptome

MJ Hawrylycz, ES Lein, AL Guillozet-Bongaarts… - Nature, 2012 - nature.com
Neuroanatomically precise, genome-wide maps of transcript distributions are critical
resources to complement genomic sequence data and to correlate functional and genetic …

An expansion of the non-coding genome and its regulatory potential underlies vertebrate neuronal diversity

M Closser, Y Guo, P Wang, T Patel, S Jang… - Neuron, 2022 - cell.com
Proper assembly and function of the nervous system requires the generation of a uniquely
diverse population of neurons expressing a cell-type-specific combination of effector genes …

A comprehensive transcriptional map of primate brain development

TE Bakken, JA Miller, SL Ding, SM Sunkin, KA Smith… - Nature, 2016 - nature.com
The transcriptional underpinnings of brain development remain poorly understood,
particularly in humans and closely related non-human primates. We describe a high …

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge… - Nature, 2021 - nature.com
Single-cell transcriptomics can provide quantitative molecular signatures for large, unbiased
samples of the diverse cell types in the brain,–. With the proliferation of multi-omics datasets …

Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler

F Noack, S Vangelisti, G Raffl, M Carido… - Nature …, 2022 - nature.com
How multiple epigenetic layers and transcription factors (TFs) interact to facilitate brain
development is largely unknown. Here, to systematically map the regulatory landscape of …

Fast and accurate clustering of single cell epigenomes reveals cis-regulatory elements in rare cell types

R Fang, S Preissl, X Hou, J Lucero, X Wang… - BioRxiv, 2019 - biorxiv.org
Mammalian tissues are composed of highly specialized cell types defined by distinct gene
expression patterns. Identification of cis-regulatory elements responsible for cell-type …

Massively parallel characterization of regulatory elements in the developing human cortex

C Deng, S Whalen, M Steyert, R Ziffra, PF Przytycki… - Science, 2024 - science.org
Nucleotide changes in gene regulatory elements are important determinants of neuronal
development and diseases. Using massively parallel reporter assays in primary human cells …