Differences in activity and stability drive transposable element variation in tropical and temperate maize

S Ou, T Collins, Y Qiu, AS Seetharam, CC Menard… - bioRxiv, 2022 - biorxiv.org
Much of the profound interspecific variation in genome content has been attributed to
transposable elements (TEs). To explore the extent of TE variation within species, we …

Whole-genome variation of transposable element insertions in a maize diversity panel

Y Qiu, CH O'Connor, R Della Coletta, JS Renk… - G3, 2021 - academic.oup.com
Intact transposable elements (TEs) account for 65% of the maize genome and can impact
gene function and regulation. Although TEs comprise the majority of the maize genome and …

Transposable elements contribute to dynamic genome content in maize

SN Anderson, MC Stitzer, AB Brohammer… - The Plant …, 2019 - Wiley Online Library
Transposable elements (TE s) are ubiquitous components of eukaryotic genomes and can
create variation in genome organization and content. Most maize genomes are composed of …

[HTML][HTML] Genome-wide characterization of non-reference transposable element insertion polymorphisms reveals genetic diversity in tropical and temperate maize

X Lai, JC Schnable, Z Liao, J Xu, G Zhang, C Li, E Hu… - BMC genomics, 2017 - Springer
Background Maize was originally domesticated in a tropical environment but is now widely
cultivated at temperate latitudes. Temperate and tropical maize populations have diverged …

Dynamic patterns of transcript abundance of transposable element families in maize

SN Anderson, MC Stitzer, P Zhou… - G3: Genes …, 2019 - academic.oup.com
Abstract Transposable Elements (TEs) are mobile elements that contribute the majority of
DNA sequences in the maize genome. Due to their repetitive nature, genomic studies of TEs …

[HTML][HTML] The genomic ecosystem of transposable elements in maize

MC Stitzer, SN Anderson, NM Springer… - PLoS …, 2021 - journals.plos.org
Transposable elements (TEs) constitute the majority of flowering plant DNA, reflecting their
tremendous success in subverting, avoiding, and surviving the defenses of their host …

[HTML][HTML] Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion

M Munasinghe, A Read, MC Stitzer, B Song… - PLoS …, 2023 - journals.plos.org
Structural differences between genomes are a major source of genetic variation that
contributes to phenotypic differences. Transposable elements, mobile genetic sequences …

The bright side of transposons in crop evolution

C Vitte, MA Fustier, K Alix… - Briefings in Functional …, 2014 - academic.oup.com
The past decades have revealed an unexpected yet prominent role of so-called 'junk DNA'in
the regulation of gene expression, thereby challenging our view of the mechanisms …

Cis-regulatory elements within TEs can influence expression of nearby maize genes

JM Noshay, AP Marand, SN Anderson, P Zhou… - BioRxiv, 2020 - biorxiv.org
Transposable elements (TEs) have the potential to create regulatory variation both through
disruption of existing DNA regulatory elements and through creation of novel DNA …

[HTML][HTML] A review of strategies used to identify transposition events in plant genomes

M Bajus, A Macko-Podgórni, D Grzebelus… - Frontiers in Plant …, 2022 - frontiersin.org
Transposable elements (TEs) were initially considered redundant and dubbed 'junk DNA'.
However, more recently they were recognized as an essential element of genome plasticity …