Quantifying fibrillar collagen organization with curvelet transform-based tools

Y Liu, KW Eliceiri - JoVE (Journal of Visualized Experiments), 2020 - jove.com
Fibrillar collagens are prominent extracellular matrix (ECM) components, and their topology
changes have been shown to be associated with the progression of a wide range of …

[HTML][HTML] Fibrillar collagen quantification with curvelet transform based computational methods

Y Liu, A Keikhosravi, CA Pehlke… - … in bioengineering and …, 2020 - frontiersin.org
Quantification of fibrillar collagen organization has given new insight into the possible role of
collagen topology in many diseases and has also identified candidate image-based bio …

Methods for quantifying fibrillar collagen alignment

Y Liu, A Keikhosravi, GS Mehta, CR Drifka… - Fibrosis: methods and …, 2017 - Springer
Recent evidence has implicated collagen, particularly fibrillar collagen, in a number of
diseases ranging from osteogenesis imperfecta and asthma to breast and ovarian cancer. A …

Collagen fiber centerline tracking in fibrotic tissue via deep neural networks with variational autoencoder-based synthetic training data generation

H Park, B Li, Y Liu, MS Nelson, HM Wilson… - Medical Image …, 2023 - Elsevier
The role of fibrillar collagen in the tissue microenvironment is critical in disease contexts
ranging from cancers to chronic inflammations, as evidenced by many studies. Quantifying …

Quantitative classification of 3D collagen fiber organization from volumetric images

W Lee, AO Moghaddam, Z Lin… - IEEE transactions on …, 2020 - ieeexplore.ieee.org
Collagen fibers in biological tissues have a complex 3D organization containing rich
information linked to tissue mechanical properties and are affected by mutations that lead to …

[HTML][HTML] Rapid quantification of 3D collagen fiber alignment and fiber intersection correlations with high sensitivity

M Sun, AB Bloom, MH Zaman - PLoS One, 2015 - journals.plos.org
Metastatic cancers aggressively reorganize collagen in their microenvironment. For
example, radially orientated collagen fibers have been observed surrounding tumor cell …

A fast, robust method for quantitative assessment of collagen fibril architecture from transmission electron micrographs

BV Rego, D Weiss, JD Humphrey - Microscopy and …, 2023 - academic.oup.com
Collagen is the most abundant protein in mammals; it exhibits a hierarchical organization
and provides structural support to a wide range of soft tissues, including blood vessels. The …

[HTML][HTML] Navigating the collagen jungle: the biomedical potential of fiber organization in cancer

JN Ouellette, CR Drifka, KB Pointer, Y Liu… - Bioengineering, 2021 - mdpi.com
Recent research has highlighted the importance of key tumor microenvironment features,
notably the collagen-rich extracellular matrix (ECM) in characterizing tumor invasion and …

Correction: Rapid Quantification of 3D Collagen Fiber Alignment and Fiber Intersection Correlations with High Sensitivity

M Sun, AB Bloom, MH Zaman - Plos one, 2016 - journals.plos.org
In the version of this article initially published, the authors acknowledged the research
support from the National Institutes of Health (U01-CA177799) and the National Science …

[HTML][HTML] Non-disruptive collagen characterization in clinical histopathology using cross-modality image synthesis

A Keikhosravi, B Li, Y Liu, MW Conklin… - Communications …, 2020 - nature.com
The importance of fibrillar collagen topology and organization in disease progression and
prognostication in different types of cancer has been characterized extensively in many …