JPred4: a protein secondary structure prediction server

A Drozdetskiy, C Cole, J Procter… - Nucleic acids …, 2015 - academic.oup.com
Abstract JPred4 (http://www. compbio. dundee. ac. uk/jpred4) is the latest version of the
popular JPred protein secondary structure prediction server which provides predictions by …

The Jpred 3 secondary structure prediction server

C Cole, JD Barber, GJ Barton - Nucleic acids research, 2008 - academic.oup.com
Abstract Jpred (http://www. compbio. dundee. ac. uk/jpred) is a secondary structure
prediction server powered by the Jnet algorithm. Jpred performs over 1000 predictions per …

Improving the accuracy of protein secondary structure prediction using structural alignment

S Montgomerie, S Sundararaj, WJ Gallin, DS Wishart - BMC bioinformatics, 2006 - Springer
Background The accuracy of protein secondary structure prediction has steadily improved
over the past 30 years. Now many secondary structure prediction methods routinely achieve …

Exploiting the past and the future in protein secondary structure prediction

P Baldi, S Brunak, P Frasconi, G Soda… - Bioinformatics, 1999 - academic.oup.com
Motivation: Predicting the secondary structure of a protein (alpha-helix, beta-sheet, coil) is
an important step towards elucidating its three-dimensional structure, as well as its function …

JPred: a consensus secondary structure prediction server.

JA Cuff, ME Clamp, AS Siddiqui… - Bioinformatics (Oxford …, 1998 - academic.oup.com
An interactive protein secondary structure prediction Internet server is presented. The server
allows a single sequence or multiple alignment to be submitted, and returns predictions from …

Protein secondary structure prediction using neural networks and deep learning: A review

W Wardah, MGM Khan, A Sharma… - Computational biology and …, 2019 - Elsevier
Literature contains over fifty years of accumulated methods proposed by researchers for
predicting the secondary structures of proteins in silico. A large part of this collection is …

The PSIPRED protein structure prediction server

LJ McGuffin, K Bryson, DT Jones - Bioinformatics, 2000 - academic.oup.com
The PSIPRED protein structure prediction server allows users to submit a protein sequence,
perform a prediction of their choice and receive the results of the prediction both textually via …

Application of multiple sequence alignment profiles to improve protein secondary structure prediction

JA Cuff, GJ Barton - Proteins: Structure, Function, and …, 2000 - Wiley Online Library
The effect of training a neural network secondary structure prediction algorithm with different
types of multiple sequence alignment profiles derived from the same sequences, is shown to …

Redefining the goals of protein secondary structure prediction

B Rost, C Sander, R Schneider - Journal of molecular biology, 1994 - Elsevier
Secondary structure prediction recently has surpassed the 70% level of average accuracy,
evaluated on the single residue states helix, strand and loop (Q 3). But the ultimate goal is …

Sixty-five years of the long march in protein secondary structure prediction: the final stretch?

Y Yang, J Gao, J Wang, R Heffernan… - Briefings in …, 2018 - academic.oup.com
Protein secondary structure prediction began in 1951 when Pauling and Corey predicted
helical and sheet conformations for protein polypeptide backbone even before the first …