Network-assisted analysis to prioritize GWAS results: principles, methods and perspectives

P Jia, Z Zhao - Human genetics, 2014 - Springer
Genome-wide association studies (GWAS) have rapidly become a powerful tool in genetic
studies of complex diseases and traits. Traditionally, single marker-based tests have been …

Functional and genomic context in pathway analysis of GWAS data

MA Mooney, JT Nigg, SK McWeeney, B Wilmot - Trends in Genetics, 2014 - cell.com
Gene set analysis (GSA) is a promising tool for uncovering the polygenic effects associated
with complex diseases. However, the available techniques reflect a wide variety of …

GWAB: a web server for the network-based boosting of human genome-wide association data

JE Shim, C Bang, S Yang, T Lee, S Hwang… - Nucleic acids …, 2017 - academic.oup.com
During the last decade, genome-wide association studies (GWAS) have represented a
major approach to dissect complex human genetic diseases. Due in part to limited statistical …

Systems-level analysis of genome-wide association data

CR Farber - G3: Genes| Genomes| Genetics, 2013 - academic.oup.com
Genome-wide association studies (GWAS) have emerged as the method of choice for
identifying common variants affecting complex disease. In a GWAS, particular attention is …

Pathways of distinction analysis: a new technique for multi–SNP analysis of GWAS data

R Braun, K Buetow - PLoS genetics, 2011 - journals.plos.org
Genome-wide association studies (GWAS) have become increasingly common due to
advances in technology and have permitted the identification of differences in single …

Post genome-wide association analysis: dissecting computational pathway/network-based approaches

ER Chimusa, S Dalvie, C Dandara… - Briefings in …, 2019 - academic.oup.com
Over thousands of genetic associations to diseases have been identified by genome-wide
association studies (GWASs), which conceptually is a single-marker-based approach. There …

[PDF][PDF] Pathway-based approaches for analysis of genomewide association studies

K Wang, M Li, M Bucan - The American Journal of Human Genetics, 2007 - cell.com
Published genomewide association (GWA) studies typically analyze and report single-
nucleotide polymorphisms (SNPs) and their neighboring genes with the strongest evidence …

i-GSEA4GWAS: a web server for identification of pathways/gene sets associated with traits by applying an improved gene set enrichment analysis to genome-wide …

K Zhang, S Cui, S Chang, L Zhang… - Nucleic acids …, 2010 - academic.oup.com
Genome-wide association study (GWAS) is nowadays widely used to identify genes
involved in human complex disease. The standard GWAS analysis examines SNPs/genes …

Weighted Interaction SNP Hub (WISH) network method for building genetic networks for complex diseases and traits using whole genome genotype data

LJA Kogelman, HN Kadarmideen - BMC systems biology, 2014 - Springer
Background High-throughput genotype (HTG) data has been used primarily in genome-wide
association (GWA) studies; however, GWA results explain only a limited part of the complete …

Integration of biological networks and pathways with genetic association studies

YV Sun - Human genetics, 2012 - Springer
Millions of genetic variants have been assessed for their effects on the trait of interest in
genome-wide association studies (GWAS). The complex traits are affected by a set of inter …