Network-assisted analysis to prioritize GWAS results: principles, methods and perspectives
Genome-wide association studies (GWAS) have rapidly become a powerful tool in genetic
studies of complex diseases and traits. Traditionally, single marker-based tests have been …
studies of complex diseases and traits. Traditionally, single marker-based tests have been …
Functional and genomic context in pathway analysis of GWAS data
Gene set analysis (GSA) is a promising tool for uncovering the polygenic effects associated
with complex diseases. However, the available techniques reflect a wide variety of …
with complex diseases. However, the available techniques reflect a wide variety of …
GWAB: a web server for the network-based boosting of human genome-wide association data
During the last decade, genome-wide association studies (GWAS) have represented a
major approach to dissect complex human genetic diseases. Due in part to limited statistical …
major approach to dissect complex human genetic diseases. Due in part to limited statistical …
Systems-level analysis of genome-wide association data
CR Farber - G3: Genes| Genomes| Genetics, 2013 - academic.oup.com
Genome-wide association studies (GWAS) have emerged as the method of choice for
identifying common variants affecting complex disease. In a GWAS, particular attention is …
identifying common variants affecting complex disease. In a GWAS, particular attention is …
Pathways of distinction analysis: a new technique for multi–SNP analysis of GWAS data
Genome-wide association studies (GWAS) have become increasingly common due to
advances in technology and have permitted the identification of differences in single …
advances in technology and have permitted the identification of differences in single …
Post genome-wide association analysis: dissecting computational pathway/network-based approaches
Over thousands of genetic associations to diseases have been identified by genome-wide
association studies (GWASs), which conceptually is a single-marker-based approach. There …
association studies (GWASs), which conceptually is a single-marker-based approach. There …
[PDF][PDF] Pathway-based approaches for analysis of genomewide association studies
Published genomewide association (GWA) studies typically analyze and report single-
nucleotide polymorphisms (SNPs) and their neighboring genes with the strongest evidence …
nucleotide polymorphisms (SNPs) and their neighboring genes with the strongest evidence …
i-GSEA4GWAS: a web server for identification of pathways/gene sets associated with traits by applying an improved gene set enrichment analysis to genome-wide …
K Zhang, S Cui, S Chang, L Zhang… - Nucleic acids …, 2010 - academic.oup.com
Genome-wide association study (GWAS) is nowadays widely used to identify genes
involved in human complex disease. The standard GWAS analysis examines SNPs/genes …
involved in human complex disease. The standard GWAS analysis examines SNPs/genes …
Weighted Interaction SNP Hub (WISH) network method for building genetic networks for complex diseases and traits using whole genome genotype data
LJA Kogelman, HN Kadarmideen - BMC systems biology, 2014 - Springer
Background High-throughput genotype (HTG) data has been used primarily in genome-wide
association (GWA) studies; however, GWA results explain only a limited part of the complete …
association (GWA) studies; however, GWA results explain only a limited part of the complete …
Integration of biological networks and pathways with genetic association studies
YV Sun - Human genetics, 2012 - Springer
Millions of genetic variants have been assessed for their effects on the trait of interest in
genome-wide association studies (GWAS). The complex traits are affected by a set of inter …
genome-wide association studies (GWAS). The complex traits are affected by a set of inter …