[HTML][HTML] A whole-slide foundation model for digital pathology from real-world data

H Xu, N Usuyama, J Bagga, S Zhang, R Rao… - Nature, 2024 - nature.com
Digital pathology poses unique computational challenges, as a standard gigapixel slide may
comprise tens of thousands of image tiles,–. Prior models have often resorted to …

Virchow: a million-slide digital pathology foundation model

E Vorontsov, A Bozkurt, A Casson, G Shaikovski… - arXiv preprint arXiv …, 2023 - arxiv.org
Computational pathology uses artificial intelligence to enable precision medicine and
decision support systems through the analysis of whole slide images. It has the potential to …

[HTML][HTML] Towards computationally efficient prediction of molecular signatures from routine histology images

MW Lafarge, VH Koelzer - The Lancet Digital Health, 2021 - thelancet.com
Identification of actionable genomic alterations in diagnostic tissue samples provides key
information for personalised cancer treatment. However, current diagnostic tests used to …

[HTML][HTML] Open and reusable deep learning for pathology with WSInfer and QuPath

JR Kaczmarzyk, A O'Callaghan, F Inglis, S Gat… - NPJ Precision …, 2024 - nature.com
Digital pathology has seen a proliferation of deep learning models in recent years, but many
models are not readily reusable. To address this challenge, we developed WSInfer: an open …

Atlas of digital pathology: A generalized hierarchical histological tissue type-annotated database for deep learning

MS Hosseini, L Chan, G Tse, M Tang… - Proceedings of the …, 2019 - openaccess.thecvf.com
In recent years, computer vision techniques have made large advances in image recognition
and been applied to aid radiological diagnosis. Computational pathology aims to develop …

[HTML][HTML] Slideflow: deep learning for digital histopathology with real-time whole-slide visualization

JM Dolezal, S Kochanny, E Dyer, S Ramesh… - BMC …, 2024 - Springer
Deep learning methods have emerged as powerful tools for analyzing histopathological
images, but current methods are often specialized for specific domains and software …

Transcriptomics-guided slide representation learning in computational pathology

G Jaume, L Oldenburg, A Vaidya… - Proceedings of the …, 2024 - openaccess.thecvf.com
Self-supervised learning (SSL) has been successful in building patch embeddings of small
histology images (eg 224 x 224 pixels) but scaling these models to learn slide embeddings …

A deep learning based graph-transformer for whole slide image classification

Y Zheng, R Gindra, M Betke, JE Beane… - medRxiv, 2021 - medrxiv.org
Deep learning is a powerful tool for assessing pathology data obtained from digitized biopsy
slides. In the context of supervised learning, most methods typically divide a whole slide …

Quick Annotator: an open‐source digital pathology based rapid image annotation tool

R Miao, R Toth, Y Zhou, A Madabhushi… - The Journal of …, 2021 - Wiley Online Library
Image‐based biomarker discovery typically requires accurate segmentation of histologic
structures (eg cell nuclei, tubules, and epithelial regions) in digital pathology whole slide …

[HTML][HTML] SuperHistopath: a deep learning pipeline for mapping tumor heterogeneity on low-resolution whole-slide digital histopathology images

K Zormpas-Petridis, R Noguera, DK Ivankovic… - Frontiers in …, 2021 - frontiersin.org
High computational cost associated with digital pathology image analysis approaches is a
challenge towards their translation in routine pathology clinic. Here, we propose a …