[HTML][HTML] A whole-slide foundation model for digital pathology from real-world data
Digital pathology poses unique computational challenges, as a standard gigapixel slide may
comprise tens of thousands of image tiles,–. Prior models have often resorted to …
comprise tens of thousands of image tiles,–. Prior models have often resorted to …
Virchow: a million-slide digital pathology foundation model
Computational pathology uses artificial intelligence to enable precision medicine and
decision support systems through the analysis of whole slide images. It has the potential to …
decision support systems through the analysis of whole slide images. It has the potential to …
[HTML][HTML] Towards computationally efficient prediction of molecular signatures from routine histology images
MW Lafarge, VH Koelzer - The Lancet Digital Health, 2021 - thelancet.com
Identification of actionable genomic alterations in diagnostic tissue samples provides key
information for personalised cancer treatment. However, current diagnostic tests used to …
information for personalised cancer treatment. However, current diagnostic tests used to …
[HTML][HTML] Open and reusable deep learning for pathology with WSInfer and QuPath
Digital pathology has seen a proliferation of deep learning models in recent years, but many
models are not readily reusable. To address this challenge, we developed WSInfer: an open …
models are not readily reusable. To address this challenge, we developed WSInfer: an open …
Atlas of digital pathology: A generalized hierarchical histological tissue type-annotated database for deep learning
In recent years, computer vision techniques have made large advances in image recognition
and been applied to aid radiological diagnosis. Computational pathology aims to develop …
and been applied to aid radiological diagnosis. Computational pathology aims to develop …
[HTML][HTML] Slideflow: deep learning for digital histopathology with real-time whole-slide visualization
Deep learning methods have emerged as powerful tools for analyzing histopathological
images, but current methods are often specialized for specific domains and software …
images, but current methods are often specialized for specific domains and software …
Transcriptomics-guided slide representation learning in computational pathology
G Jaume, L Oldenburg, A Vaidya… - Proceedings of the …, 2024 - openaccess.thecvf.com
Self-supervised learning (SSL) has been successful in building patch embeddings of small
histology images (eg 224 x 224 pixels) but scaling these models to learn slide embeddings …
histology images (eg 224 x 224 pixels) but scaling these models to learn slide embeddings …
A deep learning based graph-transformer for whole slide image classification
Deep learning is a powerful tool for assessing pathology data obtained from digitized biopsy
slides. In the context of supervised learning, most methods typically divide a whole slide …
slides. In the context of supervised learning, most methods typically divide a whole slide …
Quick Annotator: an open‐source digital pathology based rapid image annotation tool
Image‐based biomarker discovery typically requires accurate segmentation of histologic
structures (eg cell nuclei, tubules, and epithelial regions) in digital pathology whole slide …
structures (eg cell nuclei, tubules, and epithelial regions) in digital pathology whole slide …
[HTML][HTML] SuperHistopath: a deep learning pipeline for mapping tumor heterogeneity on low-resolution whole-slide digital histopathology images
K Zormpas-Petridis, R Noguera, DK Ivankovic… - Frontiers in …, 2021 - frontiersin.org
High computational cost associated with digital pathology image analysis approaches is a
challenge towards their translation in routine pathology clinic. Here, we propose a …
challenge towards their translation in routine pathology clinic. Here, we propose a …