Ridge regression and other kernels for genomic selection with R package rrBLUP
JB Endelman - The plant genome, 2011 - Wiley Online Library
Many important traits in plant breeding are polygenic and therefore recalcitrant to traditional
marker‐assisted selection. Genomic selection addresses this complexity by including all …
marker‐assisted selection. Genomic selection addresses this complexity by including all …
Evaluation of RR‐BLUP genomic selection models that incorporate peak genome‐wide association study signals in maize and sorghum
Certain agronomic crop traits are complex and thus governed by many small‐effect loci.
Statistical models typically used in a genome‐wide association study (GWAS) and genomic …
Statistical models typically used in a genome‐wide association study (GWAS) and genomic …
Genomic‐enabled prediction based on molecular markers and pedigree using the Bayesian linear regression package in R
The availability of dense molecular markers has made possible the use of genomic selection
in plant and animal breeding. However, models for genomic selection pose several …
in plant and animal breeding. However, models for genomic selection pose several …
Genomic selection using multiple populations
T Schulz‐Streeck, JO Ogutu, Z Karaman… - Crop …, 2012 - Wiley Online Library
Using different populations in genomic selection raises the possibility of marker effects
varying across populations. However, common models for genomic selection only account …
varying across populations. However, common models for genomic selection only account …
Genomic selection using regularized linear regression models: ridge regression, lasso, elastic net and their extensions
Background Genomic selection (GS) is emerging as an efficient and cost-effective method
for estimating breeding values using molecular markers distributed over the entire genome …
for estimating breeding values using molecular markers distributed over the entire genome …
BWGS: AR package for genomic selection and its application to a wheat breeding programme
G Charmet, LG Tran, J Auzanneau, R Rincent… - PloS one, 2020 - journals.plos.org
We developed an integrated R library called BWGS to enable easy computation of Genomic
Estimates of Breeding values (GEBV) for genomic selection. BWGS, for BreedWheat …
Estimates of Breeding values (GEBV) for genomic selection. BWGS, for BreedWheat …
Comparison between linear and non-parametric regression models for genome-enabled prediction in wheat
P Pérez-Rodríguez, D Gianola… - G3: Genes …, 2012 - academic.oup.com
In genome-enabled prediction, parametric, semi-parametric, and non-parametric regression
models have been used. This study assessed the predictive ability of linear and non-linear …
models have been used. This study assessed the predictive ability of linear and non-linear …
Ridge regression and extensions for genomewide selection in maize
HP Piepho - Crop Science, 2009 - Wiley Online Library
This paper reviews properties of ridge regression for genomewide (genomic) selection and
establishes close relationships with other methods to model genetic correlation among …
establishes close relationships with other methods to model genetic correlation among …
Implementation of Genomic Prediction in Lolium perenne (L.) Breeding Populations
NF Grinberg, A Lovatt, M Hegarty, A Lovatt… - Frontiers in plant …, 2016 - frontiersin.org
Perennial ryegrass (Lolium perenne L.) is one of the most widely grown forage grasses in
temperate agriculture. In order to maintain and increase its usage as forage in livestock …
temperate agriculture. In order to maintain and increase its usage as forage in livestock …
A novel generalized ridge regression method for quantitative genetics
As the molecular marker density grows, there is a strong need in both genome-wide
association studies and genomic selection to fit models with a large number of parameters …
association studies and genomic selection to fit models with a large number of parameters …