The rapid accumulation of knowledge in the field of systems and networks biology during
recent years requires complex, but user-friendly and accessible web applications that allow …

Abstract Summary Biological Expression Language (BEL) assembles knowledge networks
from biological relations across multiple modes and scales. Here, we present PyBEL; a …

Capture and representation of scientific knowledge in a structured format are essential to
improve the understanding of biological mechanisms involved in complex diseases …

Network-based approaches have become extremely important in systems biology to achieve
a better understanding of biological mechanisms. For network representation, the Biological …

Motivation A common task in scientific research is the comparison of lists or sets of diverse
biological entities such as biomolecules, ontologies, sequences and expression profiles …

The immense growth in the volume of research literature and experimental data in the field
of molecular biology calls for efficient automatic methods to capture and store information. In …

Biomine Explorer is a web application that enables interactive exploration of large
heterogeneous biological networks constructed from selected publicly available biological …

As systems biology has begun to draw growing attention, bio-network inference and
analysis have become more and more important. Though there have been many efforts for …

Background The rapidly increasing biological literature is a key resource to automatically
extract and gain knowledge concerning biological elements and their relations. Knowledge …

Biological network analysis is a powerful approach to gain systems-level understanding of
patterns of gene expression in different cell types, disease states and other biological …