The Virtual Cell (VCell; http://vcell. org/) is a problem solving environment, built on a central
database, for analysis, modelling and simulation of cell biological processes. VCell …

The newly emerging field of computational cell biology requires software tools that address
the needs of a broad community of scientists. Cell biological processes are controlled by an …

Abstract The Virtual Cell (VCell) is a general computational framework for modeling
physicochemical and electrophysiological processes in living cells. Developed by the …

Morpheus is a modeling environment for the simulation and integration of cell-based models
with ordinary differential equations and reaction-diffusion systems. It allows rapid …

Background Models of cellular molecular systems are built from components such as
biochemical reactions (including interactions between ligands and membrane-bound …

This article describes a computational framework for cell biological modeling and simulation
that is based on the mapping of experimental biochemical and electrophysiological data …

CellSys is a modular software tool for efficient off-lattice simulation of growth and
organization processes in multi-cellular systems in 2D and 3D. It implements an agent …

This paper describes a computational framework for cell biological modeling and simulation
that is based on the mapping of experimental biochemical andelectrophysiological data onto …

The intracellular environment of a cell hosts a wide variety of enzymatic reactions, diffusion
events, molecular binding, polymerization and metabolic channeling. To transform these …

Study of the cell will never be complete unless its dynamic behavior is understood. The
complex behavior of the cell cannot be determined or predicted unless a computer model of …