YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts

PT Monteiro, J Oliveira, P Pais, M Antunes… - Nucleic acids …, 2020 - academic.oup.com
The YEASTRACT+ information system (http://YEASTRACT-PLUS. org/) is a wide-scope tool
for the analysis and prediction of transcription regulatory associations at the gene and …

YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis

MC Teixeira, R Viana, M Palma, J Oliveira… - Nucleic Acids …, 2023 - academic.oup.com
Abstract YEASTRACT+ (http://yeastract-plus. org/) is a tool for the analysis, prediction and
modelling of transcription regulatory data at the gene and genomic levels in yeasts. It …

The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae

MC Teixeira, PT Monteiro, JF Guerreiro… - Nucleic acids …, 2014 - academic.oup.com
Abstract The YEASTRACT (http://www. yeastract. com) information system is a tool for the
analysis and prediction of transcription regulatory associations in Saccharomyces …

YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae

MC Teixeira, PT Monteiro, M Palma… - Nucleic acids …, 2018 - academic.oup.com
Abstract The YEAst Search for Transcriptional Regulators And Consensus Tracking
(YEASTRACT—www. yeastract. com) information system has been, for 11 years, a key tool …

High-resolution DNA-binding specificity analysis of yeast transcription factors

C Zhu, KJRP Byers, RP McCord, Z Shi… - Genome …, 2009 - genome.cshlp.org
Transcription factors (TFs) regulate the expression of genes through sequence-specific
interactions with DNA-binding sites. However, despite recent progress in identifying in vivo …

YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae

PT Monteiro, ND Mendes, MC Teixeira… - Nucleic acids …, 2007 - academic.oup.com
The Yeast search for transcriptional regulators and consensus tracking (YEASTRACT)
information system (www. yeastract. com) was developed to support the analysis of …

Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights

R Gordân, KF Murphy, RP McCord, C Zhu, A Vedenko… - Genome biology, 2011 - Springer
Abstract Background Transcription factors (TFs) play a central role in regulating gene
expression by interacting with cis-regulatory DNA elements associated with their target …

ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species

AT Spivak, GD Stormo - Nucleic acids research, 2012 - academic.oup.com
Saccharomyces cerevisiae is a primary model for studies of transcriptional control, and the
specificities of most yeast transcription factors (TFs) have been determined by multiple …

YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities

CG De Boer, TR Hughes - Nucleic acids research, 2012 - academic.oup.com
The yeast Saccharomyces cerevisiae is a prevalent system for the analysis of transcriptional
networks. As a result, multiple DNA-binding sequence specificities (motifs) have been …

Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets

J Reimand, JM Vaquerizas, AE Todd, J Vilo… - Nucleic acids …, 2010 - academic.oup.com
Transcription factor (TF) perturbation experiments give valuable insights into gene
regulation. Genome-scale evidence from microarray measurements may be used to identify …