Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations
Mutations, the fuel of evolution, are first manifested as rare DNA changes within a population
of cells. Although next-generation sequencing (NGS) technologies have revolutionized the …
of cells. Although next-generation sequencing (NGS) technologies have revolutionized the …
The role of replicates for error mitigation in next-generation sequencing
Advances in next-generation sequencing (NGS) technologies have rapidly improved
sequencing fidelity and substantially decreased sequencing error rates. However, given that …
sequencing fidelity and substantially decreased sequencing error rates. However, given that …
Direct mutation analysis by high-throughput sequencing: from germline to low-abundant, somatic variants
M Gundry, J Vijg - … Research/Fundamental and Molecular Mechanisms of …, 2012 - Elsevier
DNA mutations are the source of genetic variation within populations. The majority of
mutations with observable effects are deleterious. In humans mutations in the germ line can …
mutations with observable effects are deleterious. In humans mutations in the germ line can …
Detection of ultra-rare mutations by next-generation sequencing
MW Schmitt, SR Kennedy, JJ Salk… - Proceedings of the …, 2012 - National Acad Sciences
Next-generation DNA sequencing promises to revolutionize clinical medicine and basic
research. However, while this technology has the capacity to generate hundreds of billions …
research. However, while this technology has the capacity to generate hundreds of billions …
DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification
L Chen, P Liu, TC Evans Jr, LM Ettwiller - Science, 2017 - science.org
Mutations in somatic cells generate a heterogeneous genomic population and may result in
serious medical conditions. Although cancer is typically associated with somatic variations …
serious medical conditions. Although cancer is typically associated with somatic variations …
Detecting rare mutations and DNA damage with sequencing-based methods
There is a great need in biomedical and genetic research to detect DNA damage and de
novo mutations, but doing so is inherently challenging because of the rarity of these events …
novo mutations, but doing so is inherently challenging because of the rarity of these events …
[HTML][HTML] A new approach for detecting low-level mutations in next-generation sequence data
M Li, M Stoneking - Genome biology, 2012 - Springer
We propose a new method that incorporates population re-sequencing data, distribution of
reads, and strand bias in detecting low-level mutations. The method can accurately identify …
reads, and strand bias in detecting low-level mutations. The method can accurately identify …
Analyzing somatic mutations by single-cell whole-genome sequencing
L Zhang, M Lee, AY Maslov, C Montagna, J Vijg… - Nature …, 2024 - nature.com
Somatic mutations are the cause of cancer and have been implicated in other,
noncancerous diseases and aging. While clonally expanded mutations can be studied by …
noncancerous diseases and aging. While clonally expanded mutations can be studied by …
Sequence error storms and the landscape of mutations in cancer
S Kirsch, CA Klein - … of the National Academy of Sciences, 2012 - National Acad Sciences
Next-generation sequencing (NGS) has revolutionized genome and transcriptome analyses
in recent years. Now, a smart and simple modification termed duplex sequencing published …
in recent years. Now, a smart and simple modification termed duplex sequencing published …
Detection of low-frequency DNA variants by targeted sequencing of the Watson and Crick strands
Identification and quantification of low-frequency mutations remain challenging despite
improvements in the baseline error rate of next-generation sequencing technologies. Here …
improvements in the baseline error rate of next-generation sequencing technologies. Here …