[HTML][HTML] Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq
D Tshiabuila, J Giandhari, S Pillay, U Ramphal… - BMC genomics, 2022 - Springer
Abstract Background Over 4 million SARS-CoV-2 genomes have been sequenced globally
in the past 2 years. This has been crucial in elucidating transmission chains within …
in the past 2 years. This has been crucial in elucidating transmission chains within …
EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts
Genomics has become an essential technology for surveilling emerging infectious disease
outbreaks. A range of technologies and strategies for pathogen genome enrichment and …
outbreaks. A range of technologies and strategies for pathogen genome enrichment and …
[HTML][HTML] A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-2
EC Carbo, K Mourik, SA Boers, BO Munnink… - European Journal of …, 2023 - Springer
Rapid identification of the rise and spread of severe acute respiratory syndrome coronavirus
2 (SARS-CoV-2) variants of concern remains critical for monitoring of the efficacy of …
2 (SARS-CoV-2) variants of concern remains critical for monitoring of the efficacy of …
[HTML][HTML] Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore
JR Tyson, P James, D Stoddart, N Sparks… - BioRxiv, 2020 - ncbi.nlm.nih.gov
Genome sequencing has been widely deployed to study the evolution of SARS-CoV-2 with
more than 90,000 genome sequences uploaded to the GISAID database. We published a …
more than 90,000 genome sequences uploaded to the GISAID database. We published a …
[HTML][HTML] CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes
We present CoronaHiT, a platform and throughput flexible method for sequencing SARS-
CoV-2 genomes (≤ 96 on MinION or> 96 on Illumina NextSeq) depending on changing …
CoV-2 genomes (≤ 96 on MinION or> 96 on Illumina NextSeq) depending on changing …
[HTML][HTML] The Easy-to-Use SARS-CoV-2 Assembler for Genome Sequencing: Development Study
M Rueca, E Giombini, F Messina… - JMIR Bioinformatics …, 2022 - bioinform.jmir.org
Background Early sequencing and quick analysis of the SARS-CoV-2 genome have
contributed to the understanding of the dynamics of COVID-19 epidemics and in designing …
contributed to the understanding of the dynamics of COVID-19 epidemics and in designing …
Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterisation
C Charre, C Ginevra, M Sabatier, H Regue… - Virus …, 2020 - academic.oup.com
Since the beginning of the COVID-19 outbreak, SARS-CoV-2 whole-genome sequencing
(WGS) has been performed at unprecedented rate worldwide with the use of very diverse …
(WGS) has been performed at unprecedented rate worldwide with the use of very diverse …
[HTML][HTML] Genomic surveillance of SARS-CoV-2 using long-range PCR primers
S Kandel, SL Hartzell, AK Ingold, GA Turner… - Frontiers in …, 2024 - frontiersin.org
Introduction Whole Genome Sequencing (WGS) of the SARS-CoV-2 virus is crucial in the
surveillance of the COVID-19 pandemic. Several primer schemes have been developed to …
surveillance of the COVID-19 pandemic. Several primer schemes have been developed to …
[HTML][HTML] poreCov-An Easy to Use, Fast, and Robust Workflow for SARS-CoV-2 Genome Reconstruction via Nanopore Sequencing
In response to the SARS-CoV-2 pandemic, a highly increased sequencing effort has been
established worldwide to track and trace ongoing viral evolution. Technologies, such as …
established worldwide to track and trace ongoing viral evolution. Technologies, such as …
[HTML][HTML] Systematic benchmarking of nanopore Q20+ kit in SARS-CoV-2 whole genome sequencing
J Luo, Z Meng, X Xu, L Wang, K Zhao, X Zhu… - Frontiers in …, 2022 - frontiersin.org
Whole genome sequencing provides rapid insight into key information about the Severe
Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), such as virus typing and key …
Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), such as virus typing and key …
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