Computational methods for prediction of protein–RNA interactions
T Puton, L Kozlowski, I Tuszynska, K Rother… - Journal of structural …, 2012 - Elsevier
Understanding the molecular mechanism of protein–RNA recognition and complex
formation is a major challenge in structural biology. Unfortunately, the experimental …
formation is a major challenge in structural biology. Unfortunately, the experimental …
[HTML][HTML] Template-based modeling of protein-RNA interactions
Protein-RNA complexes formed by specific recognition between RNA and RNA-binding
proteins play an important role in biological processes. More than a thousand of such …
proteins play an important role in biological processes. More than a thousand of such …
Computational modeling of protein–RNA complex structures
Protein–RNA interactions play fundamental roles in many biological processes, such as
regulation of gene expression, RNA splicing, and protein synthesis. The understanding of …
regulation of gene expression, RNA splicing, and protein synthesis. The understanding of …
Predicting novel RNA–RNA interactions
IM Meyer - Current opinion in structural biology, 2008 - Elsevier
The purpose of this article is to give a brief, yet concise overview of the current
computational methods for predicting novel RNA–RNA interactions, that is interactions …
computational methods for predicting novel RNA–RNA interactions, that is interactions …
Predictions of protein–RNA interactions
Ribonucleoprotein interactions play important roles in a wide variety of cellular processes,
ranging from transcriptional and posttranscriptional regulation of gene expression to host …
ranging from transcriptional and posttranscriptional regulation of gene expression to host …
Quantifying sequence and structural features of protein–RNA interactions
S Li, K Yamashita, KM Amada… - Nucleic acids …, 2014 - academic.oup.com
Increasing awareness of the importance of protein–RNA interactions has motivated many
approaches to predict residue-level RNA binding sites in proteins based on sequence or …
approaches to predict residue-level RNA binding sites in proteins based on sequence or …
[HTML][HTML] Computational prediction of RNA-binding proteins and binding sites
J Si, J Cui, J Cheng, R Wu - International journal of molecular sciences, 2015 - mdpi.com
Proteins and RNA interaction have vital roles in many cellular processes such as protein
synthesis, sequence encoding, RNA transfer, and gene regulation at the transcriptional and …
synthesis, sequence encoding, RNA transfer, and gene regulation at the transcriptional and …
RNABindR: a server for analyzing and predicting RNA-binding sites in proteins
M Terribilini, JD Sander, JH Lee, P Zaback… - Nucleic acids …, 2007 - academic.oup.com
Understanding interactions between proteins and RNA is key to deciphering the
mechanisms of many important biological processes. Here we describe RNABindR, a web …
mechanisms of many important biological processes. Here we describe RNABindR, a web …
Prediction of RNA binding proteins comes of age from low resolution to high resolution
Networks of protein–RNA interactions is likely to be larger than protein–protein and protein–
DNA interaction networks because RNA transcripts are encoded tens of times more than …
DNA interaction networks because RNA transcripts are encoded tens of times more than …
Protein–RNA interactions: structural characteristics and hotspot amino acids
DM Krüger, S Neubacher, TN Grossmann - Rna, 2018 - rnajournal.cshlp.org
Structural information about protein–RNA complexes supports the understanding of crucial
recognition processes in the cell, and it can allow the development of high affinity ligands to …
recognition processes in the cell, and it can allow the development of high affinity ligands to …