[HTML][HTML] CINner: modeling and simulation of chromosomal instability in cancer at single-cell resolution

KN Dinh, I Vázquez-García, A Chan, R Malhotra… - bioRxiv, 2024 - ncbi.nlm.nih.gov
Cancer development is characterized by chromosomal instability, manifesting in frequent
occurrences of different genomic alteration mechanisms ranging in extent and impact …

Explainable deep learning on 7500 whole genomes elucidates cancer-specific patterns of chromosomal instability

MA al-Badri, WCH Cross, CP Barnes - bioRxiv, 2024 - biorxiv.org
Chromosomal instability (CIN) refers to an increased rate of chromosomal changes within
cells. It is highly prevalent in cancer cells and leads to abnormalities in chromosome number …

Profiling Numerical and Structural Chromosomal Instability in Different Cancer Types

X Zhang, M Kschischo - Cancer Cytogenetics and Cytogenomics: Methods …, 2024 - Springer
Many cancers display whole chromosome instability (W-CIN) and structural chromosomal
instability (S-CIN), referring to increased rates of acquiring numerically and structurally …

Characterizing chromosomal instability-driven cancer evolution and cell fitness at a glance

AE Tijhuis, F Foijer - Journal of Cell Science, 2024 - journals.biologists.com
Chromosomal instability (CIN), an increased rate of chromosome segregation errors during
mitosis, is a hallmark of cancer cells. CIN leads to karyotype differences between cells and …

Predicting CIN rates from single-cell whole genome sequencing data using an in silico model

B Bakker, M Schubert, ACF Bolhaqueiro, GJPL Kops… - bioRxiv, 2023 - biorxiv.org
Chromosomal instability (CIN) drives the formation of karyotype aberrations in cancer cells
and is a major contributor to intra-tumour heterogeneity, metastasis, and therapy resistance …

Dynamics of tumor heterogeneity derived from clonal karyotypic evolution

AM Laughney, S Elizalde, G Genovese, SF Bakhoum - Cell reports, 2015 - cell.com
Numerical chromosomal instability is a ubiquitous feature of human neoplasms. Due to
experimental limitations, fundamental characteristics of karyotypic changes in cancer are …

Understanding how genetic mutations collaborate with genomic instability in cancer

LJ Jilderda, L Zhou, F Foijer - Cells, 2021 - mdpi.com
Chromosomal instability is the process of mis-segregation for ongoing chromosomes, which
leads to cells with an abnormal number of chromosomes, also known as an aneuploid state …

Genomic evolution of cancer models: perils and opportunities

U Ben-David, R Beroukhim, TR Golub - Nature Reviews Cancer, 2019 - nature.com
Cancer research relies on model systems, which reflect the biology of actual human tumours
to only a certain extent. One important feature of human cancer is its intra-tumour genomic …

Modelling chromosome structural and copy number changes to understand cancer genomes

M Kneissig, S Bernhard, Z Storchova - Current opinion in genetics & …, 2019 - Elsevier
Cancer cells differ from healthy cells by genetic information that is massively altered not only
by point mutations and small insertions and deletions, but also by large scale changes such …

Chromosomal instability as a driver of tumor heterogeneity and evolution

SF Bakhoum, DA Landau - Cold Spring …, 2017 - perspectivesinmedicine.cshlp.org
Large-scale, massively parallel sequencing of human cancer samples has revealed
tremendous genetic heterogeneity within individual tumors. Indeed, tumors are composed of …