Estimating FST and kinship for arbitrary population structures
F ST and kinship are key parameters often estimated in modern population genetics studies
in order to quantitatively characterize structure and relatedness. Kinship matrices have also …
in order to quantitatively characterize structure and relatedness. Kinship matrices have also …
Estimation of kinship coefficient in structured and admixed populations using sparse sequencing data
Knowledge of biological relatedness between samples is important for many genetic
studies. In large-scale human genetic association studies, the estimated kinship is used to …
studies. In large-scale human genetic association studies, the estimated kinship is used to …
A genealogical estimate of genetic relationships
C Fan, N Mancuso, CWK Chiang - The American Journal of Human …, 2022 - cell.com
The application of genetic relationships among individuals, characterized by a genetic
relationship matrix (GRM), has far-reaching effects in human genetics. However, the current …
relationship matrix (GRM), has far-reaching effects in human genetics. However, the current …
Correcting for population structure and kinship using the linear mixed model: theory and extensions
GE Hoffman - PloS one, 2013 - journals.plos.org
Population structure and kinship are widespread confounding factors in genome-wide
association studies (GWAS). It has been standard practice to include principal components …
association studies (GWAS). It has been standard practice to include principal components …
Model-free estimation of recent genetic relatedness
MP Conomos, AP Reiner, BS Weir… - The American Journal of …, 2016 - cell.com
Genealogical inference from genetic data is essential for a variety of applications in human
genetics. In genome-wide and sequencing association studies, for example, accurate …
genetics. In genome-wide and sequencing association studies, for example, accurate …
Population structure with localized haplotype clusters
SR Browning, BS Weir - Genetics, 2010 - academic.oup.com
We propose a multilocus version of F ST and a measure of haplotype diversity using
localized haplotype clusters. Specifically, we use haplotype clusters identified with BEAGLE …
localized haplotype clusters. Specifically, we use haplotype clusters identified with BEAGLE …
Gene Sampling Strategies for Multi-Locus Population Estimates of Genetic Diversity (θ)
MD Carling, RT Brumfield - PLoS One, 2007 - journals.plos.org
Background Theoretical work suggests that data from multiple nuclear loci provide better
estimates of population genetic parameters than do single loci, but just how many loci are …
estimates of population genetic parameters than do single loci, but just how many loci are …
AWclust: point-and-click software for non-parametric population structure analysis
X Gao, JD Starmer - BMC bioinformatics, 2008 - Springer
Background Population structure analysis is important to genetic association studies and
evolutionary investigations. Parametric approaches, eg STRUCTURE and L-POP, usually …
evolutionary investigations. Parametric approaches, eg STRUCTURE and L-POP, usually …
Estimating kinship in admixed populations
T Thornton, H Tang, TJ Hoffmann… - The American Journal of …, 2012 - cell.com
Genome-wide association studies (GWASs) are commonly used for the mapping of genetic
loci that influence complex traits. A problem that is often encountered in both population …
loci that influence complex traits. A problem that is often encountered in both population …
Estimating and interpreting FST: the impact of rare variants
In a pair of seminal papers, Sewall Wright and Gustave Malécot introduced F ST as a
measure of structure in natural populations. In the decades that followed, a number of …
measure of structure in natural populations. In the decades that followed, a number of …