Integrating whole-genome sequencing data into quantitative risk assessment of foodborne antimicrobial resistance: a review of opportunities and challenges

L Collineau, P Boerlin, CA Carson… - Frontiers in …, 2019 - frontiersin.org
Whole-genome sequencing (WGS) will soon replace traditional phenotypic methods for
routine testing of foodborne antimicrobial resistance (AMR). WGS is expected to improve …

The present and future of whole genome sequencing (WGS) and whole metagenome sequencing (WMS) for surveillance of antimicrobial resistant microorganisms …

EA Oniciuc, E Likotrafiti, A Alvarez-Molina, M Prieto… - Genes, 2018 - mdpi.com
Antimicrobial resistance (AMR) surveillance is a critical step within risk assessment
schemes, as it is the basis for informing global strategies, monitoring the effectiveness of …

Characteristics and global occurrence of human pathogens harboring antimicrobial resistance in food crops: a scoping review

A Brunn, Z Kadri-Alabi, A Moodley… - … in Sustainable Food …, 2022 - frontiersin.org
Background The role of the crop environment as a conduit for antimicrobial resistance
(AMR) through soil, water, and plants has received less attention than other sectors. Food …

The agri-food chain and antimicrobial resistance: A review

JA Hudson, LJ Frewer, G Jones, PA Brereton… - Trends in Food Science …, 2017 - Elsevier
Background Antimicrobial resistance is becoming a major threat to public health and there is
much current activity to ameliorate that threat. However, the relative contributions that …

Antibiotic resistance in the food supply chain: where can sequencing and metagenomics aid risk assessment?

J Bengtsson-Palme - Current Opinion in Food Science, 2017 - Elsevier
Highlights•Food safety risk analysis should consider antibiotic resistance selection.•DNA
sequencing can differentiate strains involved foodborne disease outbreaks.•Genome …

A state-of-art review on multi-drug resistant pathogens in foods of animal origin: risk factors and mitigation strategies

F Pérez-Rodríguez, B Mercanoglu Taban - Frontiers in Microbiology, 2019 - frontiersin.org
Most of the foodborne microbial diseases are linked to foods of animal origin such as milk,
meat, and poultry. Nowadays, the presence of multi-drug resistant (MDR) pathogens in …

Antibiotic resistance in foodborne bacteria

M Caniça, V Manageiro, H Abriouel… - Trends in Food Science …, 2019 - Elsevier
Background Antibiotic resistance, mainly due to imprudent use of antibiotics in agriculture,
environment, animal and human medicine, has been widely recognized as one of the main …

Antibiotic resistance mechanism and diagnosis of common foodborne pathogens based on genotypic and phenotypic biomarkers

X Liao, R Deng, K Warriner… - Comprehensive Reviews in …, 2023 - Wiley Online Library
The emergence of antibiotic‐resistant bacteria due to the overuse or inappropriate use of
antibiotics has become a significant public health concern. The agri‐food chain, which …

Systematic surveillance and meta-analysis of antimicrobial resistance and food sources from China and the USA

Himanshu, C R. Prudencio, AC da Costa, E Leal… - Antibiotics, 2022 - mdpi.com
Highlights Systematic analyzation to assess the spread of AMR bacteria prevalence in retail
food products and the subsequent exposure to antibiotic resistance. Out of 13,018 food …

Factors influencing antimicrobial resistance in the European food system and potential leverage points for intervention: A participatory, One Health study

IA Lambraki, M Cousins, T Graells, A Léger… - PLoS …, 2022 - journals.plos.org
Introduction Antimicrobial resistance (AMR) is a global crisis that evolves from a complex
system of factors. Understanding what factors interact is key to finding solutions. Our …