Multiscale modelling of chromatin 4D organization in SARS-CoV-2 infected cells
Abstract SARS-CoV-2 can re-structure chromatin organization and alter the epigenomic
landscape of the host genome, but the mechanisms that produce such changes remain …
landscape of the host genome, but the mechanisms that produce such changes remain …
SARS-CoV-2 restructures host chromatin architecture
Some viruses restructure host chromatin, influencing gene expression, with implications for
disease outcome. Whether this occurs for SARS-CoV-2, the virus causing COVID-19, is …
disease outcome. Whether this occurs for SARS-CoV-2, the virus causing COVID-19, is …
A 3D structural SARS-CoV-2–human interactome to explore genetic and drug perturbations
Emergence of new viral agents is driven by evolution of interactions between viral proteins
and host targets. For instance, increased infectivity of SARS-CoV-2 compared to SARS-CoV …
and host targets. For instance, increased infectivity of SARS-CoV-2 compared to SARS-CoV …
Differential chromatin accessibility in peripheral blood mononuclear cells underlies COVID-19 disease severity prior to seroconversion
SARS-CoV-2 infection triggers profound and variable immune responses in human hosts.
Chromatin remodeling has been observed in individuals severely ill or convalescing with …
Chromatin remodeling has been observed in individuals severely ill or convalescing with …
When 3D genome technology meets viral infection, including SARS‐CoV‐2
W Liang, S Wang, H Wang, X Li, Q Meng… - Journal of Medical …, 2022 - Wiley Online Library
Mammalian chromosomes undergo varying degrees of compression to form three‐
dimensional genome structures. These three‐dimensional structures undergo dynamic and …
dimensional genome structures. These three‐dimensional structures undergo dynamic and …
Gene structure heterogeneity drives transcription noise within human chromosomes
M Chiang, CA Brackley, C Naughton, RS Nozawa… - bioRxiv, 2022 - biorxiv.org
Classical observations have long suggested there is a link between 3D gene structure and
transcription–. However, due to the many factors regulating gene expression, and to the …
transcription–. However, due to the many factors regulating gene expression, and to the …
Differences in syncytia formation by SARS-CoV-2 variants modify host chromatin accessibility and cellular senescence via TP53
JD Lee, BL Menasche, M Mavrikaki, MM Uyemura… - Cell reports, 2023 - cell.com
Summary Coronavirus disease 2019 (COVID-19) remains a significant public health threat
due to the ability of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants …
due to the ability of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants …
Phase separation drives SARS-CoV-2 replication: A hypothesis
Identifying human proteins that interact with SARS-CoV-2 genome is important to
understand its replication and to identify therapeutic strategies. Recent studies have …
understand its replication and to identify therapeutic strategies. Recent studies have …
Unveiling the Machinery behind Chromosome Folding by Polymer Physics Modeling
Understanding the mechanisms underlying the complex 3D architecture of mammalian
genomes poses, at a more fundamental level, the problem of how two or multiple genomic …
genomes poses, at a more fundamental level, the problem of how two or multiple genomic …
Analyzing network diversity of cell–cell interactions in COVID-19 using single-cell transcriptomics
Cell–cell interactions (CCI) play significant roles in manipulating biological functions of cells.
Analyzing the differences in CCI between healthy and diseased conditions of a biological …
Analyzing the differences in CCI between healthy and diseased conditions of a biological …