Chromatin architecture reorganization during stem cell differentiation

JR Dixon, I Jung, S Selvaraj, Y Shen… - Nature, 2015 - nature.com
Higher-order chromatin structure is emerging as an important regulator of gene expression.
Although dynamic chromatin structures have been identified in the genome, the full scope of …

Allelic reprogramming of 3D chromatin architecture during early mammalian development

Z Du, H Zheng, B Huang, R Ma, J Wu, X Zhang, J He… - Nature, 2017 - nature.com
In mammals, chromatin organization undergoes drastic reprogramming after fertilization.
However, the three-dimensional structure of chromatin and its reprogramming in …

Simultaneous profiling of chromatin architecture and transcription in single cells

J Qu, J Sun, C Zhao, X Liu, X Zhang, S Jiang… - Nature Structural & …, 2023 - nature.com
The three-dimensional structure of chromatin plays a crucial role in development and
disease, both of which are associated with transcriptional changes. However, given the …

An atlas of dynamic chromatin landscapes in mouse fetal development

DU Gorkin, I Barozzi, Y Zhao, Y Zhang, H Huang… - Nature, 2020 - nature.com
Abstract The Encyclopedia of DNA Elements (ENCODE) project has established a genomic
resource for mammalian development, profiling a diverse panel of mouse tissues at 8 …

Mapping and analysis of chromatin state dynamics in nine human cell types

J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh… - Nature, 2011 - nature.com
Chromatin profiling has emerged as a powerful means of genome annotation and detection
of regulatory activity. The approach is especially well suited to the characterization of non …

The landscape of accessible chromatin in mammalian preimplantation embryos

J Wu, BO Huang, HE Chen, Q Yin, Y Liu, Y Xiang… - Nature, 2016 - nature.com
In mammals, extensive chromatin reorganization is essential for reprogramming terminally
committed gametes to a totipotent state during preimplantation development. However, the …

Chromatin connectivity maps reveal dynamic promoter–enhancer long-range associations

Y Zhang, CH Wong, RY Birnbaum, G Li, R Favaro… - Nature, 2013 - nature.com
In multicellular organisms, transcription regulation is one of the central mechanisms
modelling lineage differentiation and cell-fate determination. Transcription requires dynamic …

Chromatin state dynamics during blood formation

D Lara-Astiaso, A Weiner, E Lorenzo-Vivas, I Zaretsky… - science, 2014 - science.org
Chromatin modifications are crucial for development, yet little is known about their dynamics
during differentiation. Hematopoiesis provides a well-defined model to study chromatin state …

Symmetric inheritance of parental histones governs epigenome maintenance and embryonic stem cell identity

A Wenger, A Biran, N Alcaraz, A Redó-Riveiro… - Nature …, 2023 - nature.com
Modified parental histones are segregated symmetrically to daughter DNA strands during
replication and can be inherited through mitosis. How this may sustain the epigenome and …

Divergent wiring of repressive and active chromatin interactions between mouse embryonic and trophoblast lineages

S Schoenfelder, B Mifsud, CE Senner, CD Todd… - Nature …, 2018 - nature.com
The establishment of the embryonic and trophoblast lineages is a developmental decision
underpinned by dramatic differences in the epigenetic landscape of the two compartments …