A generic method for assignment of reliability scores applied to solvent accessibility predictions

B Petersen, TN Petersen, P Andersen, M Nielsen… - BMC structural …, 2009 - Springer
Background Estimation of the reliability of specific real value predictions is nontrivial and the
efficacy of this is often questionable. It is important to know if you can trust a given prediction …

Real value prediction of solvent accessibility from amino acid sequence

S Ahmad, MM Gromiha, A Sarai - Proteins: Structure, Function …, 2003 - Wiley Online Library
The solvent accessibility of amino acid residues has been predicted in the past by
classifying them into exposure states with varying thresholds. This classification provides a …

Accurate prediction of solvent accessibility using neural networks–based regression

R Adamczak, A Porollo, J Meller - Proteins: Structure, Function …, 2004 - Wiley Online Library
Accurate prediction of relative solvent accessibilities (RSAs) of amino acid residues in
proteins may be used to facilitate protein structure prediction and functional annotation …

Linear regression models for solvent accessibility prediction in proteins

M Wagner, R Adamczak, A Porollo… - Journal of Computational …, 2005 - liebertpub.com
The relative solvent accessibility (RSA) of an amino acid residue in a protein structure is a
real number that represents the solvent exposed surface area of this residue in relative …

RVP-net: online prediction of real valued accessible surface area of proteins from single sequences

S Ahmad, MM Gromiha, A Sarai - Bioinformatics, 2003 - academic.oup.com
RVP-net is an online program for the prediction of real valued solvent accessibility. All
previous methods of accessible surface area (ASA) predictions classify amino acid residues …

Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure

A Garg, H Kaur, GPS Raghava - Proteins: Structure, Function …, 2005 - Wiley Online Library
The present study is an attempt to develop a neural network‐based method for predicting
the real value of solvent accessibility from the sequence using evolutionary information in …

NETASA: neural network based prediction of solvent accessibility

S Ahmad, MM Gromiha - Bioinformatics, 2002 - academic.oup.com
Motivation: Prediction of the tertiary structure of a protein from its amino acid sequence is
one of the most important problems in molecular biology. The successful prediction of …

Prediction of coordination number and relative solvent accessibility in proteins

G Pollastri, P Baldi, P Fariselli… - … : Structure, Function, and …, 2002 - Wiley Online Library
Knowing the coordination number and relative solvent accessibility of all the residues in a
protein is crucial for deriving constraints useful in modeling protein folding and protein …

Sann: solvent accessibility prediction of proteins by nearest neighbor method

K Joo, SJ Lee, J Lee - Proteins: Structure, Function, and …, 2012 - Wiley Online Library
We present a method to predict the solvent accessibility of proteins which is based on a
nearest neighbor method applied to the sequence profiles. Using the method, continuous …

Conservation and prediction of solvent accessibility in protein families

B Rost, C Sander - Proteins: Structure, Function, and …, 1994 - Wiley Online Library
Currently, the prediction of three‐dimensional (3D) protein structure from sequence alone is
an exceedingly difficult task. As an intermediate step, a much simpler task has been pursued …