A review of enzyme design in catalytic stability by artificial intelligence

Y Ming, W Wang, R Yin, M Zeng, L Tang… - Briefings in …, 2023 - academic.oup.com
The design of enzyme catalytic stability is of great significance in medicine and industry.
However, traditional methods are time-consuming and costly. Hence, a growing number of …

[HTML][HTML] Data-driven strategies for the computational design of enzyme thermal stability: Trends, perspectives, and prospects: Data-driven strategies for enzyme …

Z Dou, Y Sun, X Jiang, X Wu, Y Li, B Gong… - Acta Biochimica et …, 2023 - ncbi.nlm.nih.gov
Thermal stability is one of the most important properties of enzymes, which sustains life and
determines the potential for the industrial application of biocatalysts. Although traditional …

Computational design of stable and soluble biocatalysts

M Musil, H Konegger, J Hon, D Bednar… - Acs Catalysis, 2018 - ACS Publications
Natural enzymes are delicate biomolecules possessing only marginal thermodynamic
stability. Poorly stable, misfolded, and aggregated proteins lead to huge economic losses in …

Revolutionizing enzyme engineering through artificial intelligence and machine learning

N Singh, S Malik, A Gupta… - Emerging Topics in Life …, 2021 - portlandpress.com
The combinatorial space of an enzyme sequence has astronomical possibilities and
exploring it with contemporary experimental techniques is arduous and often ineffective …

Rational-design engineering to improve enzyme thermostability

V Pongsupasa, P Anuwan, S Maenpuen… - … : Methods and Protocols, 2022 - Springer
The fundamentals of thermostability engineering need to be carried out for proteins with low
thermal stability to expand their utilization. Thus, comprehension of the thermal stability …

Context-dependent design of induced-fit enzymes using deep learning generates well-expressed, thermally stable and active enzymes

L Zimmerman, N Alon, I Levin… - Proceedings of the …, 2024 - National Acad Sciences
The potential of engineered enzymes in industrial applications is often limited by their
expression levels, thermal stability, and catalytic diversity. De novo enzyme design faces …

Enhancing computational enzyme design by a maximum entropy strategy

WJ Xie, M Asadi, A Warshel - Proceedings of the National …, 2022 - National Acad Sciences
Although computational enzyme design is of great importance, the advances utilizing
physics-based approaches have been slow, and further progress is urgently needed. One …

Sequence-based prediction of enzyme thermostability through bioinformatics algorithms

M Ebrahimi, E Ebrahimie - Current Bioinformatics, 2010 - ingentaconnect.com
Predicting the thermostability of a biomolecule, given its sequence, is one of the big
challenges of protein engineering and developing tools to screen thermostable mutants is of …

Robust enzyme design: Bioinformatic tools for improved protein stability

D Suplatov, V Voevodin, V Švedas - Biotechnology journal, 2015 - Wiley Online Library
The ability of proteins and enzymes to maintain a functionally active conformation under
adverse environmental conditions is an important feature of biocatalysts, vaccines, and …

A general and efficient strategy for generating the stable enzymes

XF Zhang, GY Yang, Y Zhang, Y Xie, SG Withers… - Scientific reports, 2016 - nature.com
The local flexibility of an enzyme's active center plays pivotal roles in catalysis, however,
little is known about how the flexibility of these flexible residues affects stability. In this study …