[HTML][HTML] Prediction of effector protein structures from fungal phytopathogens enables evolutionary analyses

K Seong, KV Krasileva - Nature Microbiology, 2023 - nature.com
Elucidating the similarity and diversity of pathogen effectors is critical to understand their
evolution across fungal phytopathogens. However, rapid divergence that diminishes …

EffectorP: predicting fungal effector proteins from secretomes using machine learning

J Sperschneider, DM Gardiner, PN Dodds… - New …, 2016 - Wiley Online Library
Eukaryotic filamentous plant pathogens secrete effector proteins that modulate the host cell
to facilitate infection. Computational effector candidate identification and subsequent …

[HTML][HTML] Computational prediction of effector proteins in fungi: opportunities and challenges

H Sonah, RK Deshmukh, RR Bélanger - Frontiers in plant science, 2016 - frontiersin.org
Effector proteins are mostly secretory proteins that stimulate plant infection by manipulating
the host response. Identifying fungal effector proteins and understanding their function is of …

Computational Structural Genomics Unravels Common Folds and Novel Families in the Secretome of Fungal Phytopathogen Magnaporthe oryzae

K Seong, KV Krasileva - Molecular Plant-Microbe Interactions, 2021 - Am Phytopath Society
Structural biology has the potential to illuminate the evolution of pathogen effectors and their
commonalities that cannot be readily detected at the primary sequence level. Recent …

[HTML][HTML] Effector biology of biotrophic plant fungal pathogens: Current advances and future prospects

R Jaswal, K Kiran, S Rajarammohan, H Dubey… - Microbiological …, 2020 - Elsevier
The interaction of fungal pathogens with their host requires a novel invading mechanism
and the presence of various virulence-associated components responsible for promoting the …

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

J Sperschneider, PN Dodds… - Molecular plant …, 2018 - Wiley Online Library
Plant‐pathogenic fungi secrete effector proteins to facilitate infection. We describe extensive
improvements to EffectorP, the first machine learning classifier for fungal effector prediction …

[HTML][HTML] Advances and challenges in computational prediction of effectors from plant pathogenic fungi

J Sperschneider, PN Dodds, DM Gardiner… - PLoS …, 2015 - journals.plos.org
Fungi occupy diverse environmental niches and many have evolved to live a pathogenic
lifestyle, causing devastating diseases in plants and animals. The interface between host …

EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes

J Sperschneider, PN Dodds - Molecular Plant-Microbe …, 2022 - Am Phytopath Society
Many fungi and oomycete species are devasting plant pathogens. These eukaryotic
filamentous pathogens secrete effector proteins to facilitate plant infection. Fungi and …

[HTML][HTML] Structure analysis uncovers a highly diverse but structurally conserved effector family in phytopathogenic fungi

K de Guillen, D Ortiz-Vallejo, J Gracy, E Fournier… - PLoS …, 2015 - journals.plos.org
Phytopathogenic ascomycete fungi possess huge effector repertoires that are dominated by
hundreds of sequence-unrelated small secreted proteins. The molecular function of these …

Effectors of filamentous plant pathogens: commonalities amid diversity

M Franceschetti, A Maqbool… - Microbiology and …, 2017 - Am Soc Microbiol
Fungi and oomycetes are filamentous microorganisms that include a diversity of highly
developed pathogens of plants. These are sophisticated modulators of plant processes that …