WALTZ-DB 2.0: an updated database containing structural information of experimentally determined amyloid-forming peptides

N Louros, K Konstantoulea… - Nucleic acids …, 2020 - academic.oup.com
Transition of soluble proteins into insoluble amyloid fibrils is driven by self-propagating short
sequence stretches. However, accurate prediction of aggregation determinants remains …

WALTZ-DB: a benchmark database of amyloidogenic hexapeptides

J Beerten, J Van Durme, R Gallardo, E Capriotti… - …, 2015 - academic.oup.com
Accurate prediction of amyloid-forming amino acid sequences remains an important
challenge. We here present an online database that provides open access to the largest set …

Sequence determinants of amyloid fibril formation

M López de la Paz, L Serrano - Proceedings of the National …, 2004 - National Acad Sciences
The establishment of rules that link sequence and amyloid feature is critical for our
understanding of misfolding diseases. To this end, we have performed a saturation …

Exploring the sequence–structure relationship for amyloid peptides

KL Morris, A Rodger, MR Hicks… - Biochemical …, 2013 - portlandpress.com
Amyloid fibril formation is associated with misfolding diseases, as well as fulfilling a
functional role. The cross-β molecular architecture has been reported in increasing numbers …

[HTML][HTML] Amyloidogenic determinants are usually not buried

KK Frousios, VA Iconomidou, CM Karletidi… - BMC structural …, 2009 - Springer
Background Amyloidoses are a group of usually fatal diseases, probably caused by protein
misfolding and subsequent aggregation into amyloid fibrillar deposits. The mechanisms …

Computational models for the prediction of polypeptide aggregation propensity

A Caflisch - Current opinion in chemical biology, 2006 - Elsevier
In amyloid fibrils, β-strand conformations of polypeptide chains, or segments thereof, are
perpendicular to the fibril axis, but knowledge of their three dimensional structure at atomic …

[HTML][HTML] Breaking the amyloidogenicity code: methods to predict amyloids from amino acid sequence

AB Ahmed, AV Kajava - FEBS letters, 2013 - Elsevier
Numerous studies have shown that the ability to form amyloid fibrils is an inherent property
of the polypeptide chain. This has lead to the development of several computational …

Exploring the sequence determinants of amyloid structure using position-specific scoring matrices

S Maurer-Stroh, M Debulpaep, N Kuemmerer… - Nature …, 2010 - nature.com
Protein aggregation results in β-sheet–like assemblies that adopt either a variety of
amorphous morphologies or ordered amyloid-like structures. These differences in structure …

[HTML][HTML] Looking beyond the core: the role of flanking regions in the aggregation of amyloidogenic peptides and proteins

SM Ulamec, DJ Brockwell, SE Radford - Frontiers in Neuroscience, 2020 - frontiersin.org
Amyloid proteins are involved in many neurodegenerative disorders such as Alzheimer's
disease [Tau, Amyloid β (Aβ)], Parkinson's disease [alpha-synuclein (αSyn)], and …

[HTML][HTML] Competition between crystal and fibril formation in molecular mutations of amyloidogenic peptides

NP Reynolds, J Adamcik, JT Berryman… - Nature …, 2017 - nature.com
Amyloidogenic model peptides are invaluable for investigating assembly mechanisms in
disease related amyloids and in protein folding. During aggregation, such peptides can …