WALTZ-DB 2.0: an updated database containing structural information of experimentally determined amyloid-forming peptides
N Louros, K Konstantoulea… - Nucleic acids …, 2020 - academic.oup.com
Transition of soluble proteins into insoluble amyloid fibrils is driven by self-propagating short
sequence stretches. However, accurate prediction of aggregation determinants remains …
sequence stretches. However, accurate prediction of aggregation determinants remains …
WALTZ-DB: a benchmark database of amyloidogenic hexapeptides
J Beerten, J Van Durme, R Gallardo, E Capriotti… - …, 2015 - academic.oup.com
Accurate prediction of amyloid-forming amino acid sequences remains an important
challenge. We here present an online database that provides open access to the largest set …
challenge. We here present an online database that provides open access to the largest set …
Sequence determinants of amyloid fibril formation
M López de la Paz, L Serrano - Proceedings of the National …, 2004 - National Acad Sciences
The establishment of rules that link sequence and amyloid feature is critical for our
understanding of misfolding diseases. To this end, we have performed a saturation …
understanding of misfolding diseases. To this end, we have performed a saturation …
Exploring the sequence–structure relationship for amyloid peptides
Amyloid fibril formation is associated with misfolding diseases, as well as fulfilling a
functional role. The cross-β molecular architecture has been reported in increasing numbers …
functional role. The cross-β molecular architecture has been reported in increasing numbers …
[HTML][HTML] Amyloidogenic determinants are usually not buried
KK Frousios, VA Iconomidou, CM Karletidi… - BMC structural …, 2009 - Springer
Background Amyloidoses are a group of usually fatal diseases, probably caused by protein
misfolding and subsequent aggregation into amyloid fibrillar deposits. The mechanisms …
misfolding and subsequent aggregation into amyloid fibrillar deposits. The mechanisms …
Computational models for the prediction of polypeptide aggregation propensity
A Caflisch - Current opinion in chemical biology, 2006 - Elsevier
In amyloid fibrils, β-strand conformations of polypeptide chains, or segments thereof, are
perpendicular to the fibril axis, but knowledge of their three dimensional structure at atomic …
perpendicular to the fibril axis, but knowledge of their three dimensional structure at atomic …
[HTML][HTML] Breaking the amyloidogenicity code: methods to predict amyloids from amino acid sequence
AB Ahmed, AV Kajava - FEBS letters, 2013 - Elsevier
Numerous studies have shown that the ability to form amyloid fibrils is an inherent property
of the polypeptide chain. This has lead to the development of several computational …
of the polypeptide chain. This has lead to the development of several computational …
Exploring the sequence determinants of amyloid structure using position-specific scoring matrices
S Maurer-Stroh, M Debulpaep, N Kuemmerer… - Nature …, 2010 - nature.com
Protein aggregation results in β-sheet–like assemblies that adopt either a variety of
amorphous morphologies or ordered amyloid-like structures. These differences in structure …
amorphous morphologies or ordered amyloid-like structures. These differences in structure …
[HTML][HTML] Looking beyond the core: the role of flanking regions in the aggregation of amyloidogenic peptides and proteins
SM Ulamec, DJ Brockwell, SE Radford - Frontiers in Neuroscience, 2020 - frontiersin.org
Amyloid proteins are involved in many neurodegenerative disorders such as Alzheimer's
disease [Tau, Amyloid β (Aβ)], Parkinson's disease [alpha-synuclein (αSyn)], and …
disease [Tau, Amyloid β (Aβ)], Parkinson's disease [alpha-synuclein (αSyn)], and …
[HTML][HTML] Competition between crystal and fibril formation in molecular mutations of amyloidogenic peptides
Amyloidogenic model peptides are invaluable for investigating assembly mechanisms in
disease related amyloids and in protein folding. During aggregation, such peptides can …
disease related amyloids and in protein folding. During aggregation, such peptides can …