[HTML][HTML] Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA

LL Chen, GG Carmichael - Molecular cell, 2009 - cell.com
In many cells, mRNAs containing inverted repeats (Alu repeats in humans) in their 3′
untranslated regions (3′ UTRs) are inefficiently exported to the cytoplasm. Nuclear …

[HTML][HTML] An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles

CM Clemson, JN Hutchinson, SA Sara, AW Ensminger… - Molecular cell, 2009 - cell.com
NEAT1 RNA, a highly abundant 4 kb ncRNA, is retained in nuclei in approximately 10 to 20
large foci that we show are completely coincident with paraspeckles, nuclear domains …

Alternative 3′‐end processing of long noncoding RNA initiates construction of nuclear paraspeckles

T Naganuma, S Nakagawa, A Tanigawa… - The EMBO …, 2012 - embopress.org
Paraspeckles are unique subnuclear structures built around a specific long noncoding RNA,
NEAT1, which is comprised of two isoforms produced by alternative 3′‐end processing …

Protein arginine methyltransferase CARM1 attenuates the paraspeckle-mediated nuclear retention of mRNAs containing IRAlus

SB Hu, JF Xiang, X Li, Y Xu, W Xue… - Genes & …, 2015 - genesdev.cshlp.org
In many cells, mRNAs containing inverted repeated Alu elements (IR Alu s) in their 3′
untranslated regions (UTRs) are inefficiently exported to the cytoplasm. Such nuclear …

TPR is required for the efficient nuclear export of mRNAs and lncRNAs from short and intron-poor genes

ES Lee, EJ Wolf, SSJ Ihn, HW Smith… - Nucleic acids …, 2020 - academic.oup.com
While splicing has been shown to enhance nuclear export, it has remained unclear whether
mRNAs generated from intronless genes use specific machinery to promote their export …

[HTML][HTML] Sequence determinants for nuclear retention and cytoplasmic export of mRNAs and lncRNAs

AF Palazzo, ES Lee - Frontiers in genetics, 2018 - frontiersin.org
Eukaryotes are divided into two major compartments: the nucleus where RNA is synthesized
and processed, and the cytoplasm, where mRNA is translated into proteins. Although many …

Paraspeckles: nuclear bodies built on long noncoding RNA

CS Bond, AH Fox - Journal of Cell Biology, 2009 - rupress.org
Paraspeckles are ribonucleoprotein bodies found in the interchromatin space of mammalian
cell nuclei. These structures play a role in regulating the expression of certain genes in …

Nuclear retention of mRNAs–quality control, gene regulation and human disease

M Wegener, M Müller-McNicoll - Seminars in Cell & Developmental …, 2018 - Elsevier
Nuclear retention of incompletely spliced or mature mRNAs emerges as a novel, previously
underappreciated layer of gene regulation, which enables the cell to rapidly respond to …

Functional dissection of NEAT1 using genome editing reveals substantial localization of the NEAT1_1 isoform outside paraspeckles

R Li, AR Harvey, SI Hodgetts, AH Fox - Rna, 2017 - rnajournal.cshlp.org
Large numbers of long noncoding RNAs have been discovered in recent years, but only a
few have been characterized. NEAT1 (nuclear paraspeckle assembly transcript 1) is a …

Phosphorothioate oligonucleotides can displace NEAT1 RNA and form nuclear paraspeckle-like structures

W Shen, X Liang, ST Crooke - Nucleic acids research, 2014 - academic.oup.com
Nuclear paraspeckles are built co-transcriptionally around a long non-coding RNA, NEAT1.
Here we report that transfected 20-mer phosphorothioate-modified (PS) antisense …