In vivo dynamics of RNA polymerase II transcription

X Darzacq, Y Shav-Tal, V De Turris, Y Brody… - Nature structural & …, 2007 - nature.com
We imaged transcription in living cells using a locus-specific reporter system, which allowed
precise, single-cell kinetic measurements of promoter binding, initiation and elongation …

Real-time observation of transcription initiation and elongation on an endogenous yeast gene

DR Larson, D Zenklusen, B Wu, JA Chao, RH Singer - science, 2011 - science.org
Cellular messenger RNA levels are achieved by the combinatorial complexity of factors
controlling transcription, yet the small number of molecules involved in these pathways …

[HTML][HTML] Modulation of RNA polymerase assembly dynamics in transcriptional regulation

SA Gorski, SK Snyder, S John, I Grummt, T Misteli - Molecular cell, 2008 - cell.com
The interaction of transcription factors with target genes is highly dynamic. Whether the
dynamic nature of these interactions is merely an intrinsic property of transcription factors or …

[HTML][HTML] A movie of RNA polymerase II transcription

ACM Cheung, P Cramer - Cell, 2012 - cell.com
We provide here a molecular movie that captures key aspects of RNA polymerase II initiation
and elongation. To create the movie, we combined structural snapshots of the initiation …

Defining mechanisms that regulate RNA polymerase II transcription in vivo

NJ Fuda, MB Ardehali, JT Lis - Nature, 2009 - nature.com
In the eukaryotic genome, the thousands of genes that encode messenger RNA are
transcribed by a molecular machine called RNA polymerase II. Analysing the distribution …

[HTML][HTML] Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells

CG Danko, N Hah, X Luo, AL Martins, L Core, JT Lis… - Molecular cell, 2013 - cell.com
Summary RNA polymerase II (Pol II) transcribes hundreds of kilobases of DNA, limiting the
production of mRNAs and lncRNAs. We used global run-on sequencing (GRO-seq) to …

Organization and regulation of gene transcription

P Cramer - Nature, 2019 - nature.com
The regulated transcription of genes determines cell identity and function. Recent structural
studies have elucidated mechanisms that govern the regulation of transcription by RNA …

Transcription initiation by human RNA polymerase II visualized at single-molecule resolution

A Revyakin, Z Zhang, RA Coleman, Y Li… - Genes & …, 2012 - genesdev.cshlp.org
Forty years of classical biochemical analysis have identified the molecular players involved
in initiation of transcription by eukaryotic RNA polymerase II (Pol II) and largely assigned …

RNA polymerase is poised for activation across the genome

GW Muse, DA Gilchrist, S Nechaev, R Shah… - Nature …, 2007 - nature.com
Regulation of gene expression is integral to the development and survival of all organisms.
Transcription begins with the assembly of a pre-initiation complex at the gene promoter …

Imaging RNA polymerase III transcription using a photostable RNA–fluorophore complex

W Song, GS Filonov, H Kim, M Hirsch, X Li… - Nature chemical …, 2017 - nature.com
Quantitative measurement of transcription rates in live cells is important for revealing
mechanisms of transcriptional regulation. This is particularly challenging when measuring …