Molecular dynamics of hemoglobin reveals structural alterations and explains the interactions driving sickle cell fibrillation

D Maity, D Pal - The Journal of Physical Chemistry B, 2021 - ACS Publications
In sickle cell anemia, deoxyhemoglobin deforms RBCs by forming fibrils inside that
disintegrate on oxygenation. We studied 100 ns long all-atom molecular dynamics (MD) for …

Multiscale MD simulations of wild‐type and sickle hemoglobin aggregation

MO Olagunju, J Loschwitz, OO Olubiyi… - Proteins: Structure …, 2022 - Wiley Online Library
Sickle cell disease is a hemoglobinopathy resulting from a point mutation from glutamate to
valine at position six of the β‐globin chains of hemoglobin. This mutation gives rise to …

On the nonaggregation of normal adult hemoglobin and the aggregation of sickle cell hemoglobin

N Galamba - The Journal of Physical Chemistry B, 2019 - ACS Publications
Sickle cell disease is a genetic disorder associated with a single mutation (Glu-β6→ Val-β6)
in the β chains of hemoglobin, causing the polymerization of deoxygenated sickle cell …

Coarse‐grained and all‐atom modeling of structural states and transitions in hemoglobin

M Tekpinar, W Zheng - Proteins: Structure, Function, and …, 2013 - Wiley Online Library
Abstract Hemoglobin (Hb), an oxygen‐binding protein composed of four subunits (α1, α2,
β1, and β2), is a well‐known example of allosteric proteins that are capable of cooperative …

Molecular insights into the irreversible mechanical behavior of sickle hemoglobin

S Yesudasan, SA Douglas, MO Platt… - Journal of …, 2019 - Taylor & Francis
Sickle cell disease is caused by the amino acid substitution of glutamic acid to valine, which
leads to the polymerization of deoxygenated sickle hemoglobin (HbS) into long strands …

On the binding free energy and molecular origin of sickle cell hemoglobin aggregation

N Galamba, S Pipolo - The Journal of Physical Chemistry B, 2018 - ACS Publications
Protein aggregation is associated with various diseases, including Alzheimer and Parkinson
as well as sickle cell disease (SCD). From a molecular point of view, protein aggregation …

Molecular dynamics simulation and MM–PBSA calculations of sickle cell hemoglobin in dimer form with Val, Trp, or Phe at the lateral contact

H Abroshan, H Akbarzadeh… - Journal of Physical …, 2010 - Wiley Online Library
Sickle cell anemia reflects a single change in the amino acid building blocks of the oxygen-
transport protein, hemoglobin. The beta subunits have the neutral hydrophobic amino acid …

Quaternary Structure Transitions of Human Hemoglobin: An Atomic-Level View of the Functional Intermediate States

N Balasco, J Alba, M D'Abramo… - Journal of Chemical …, 2021 - ACS Publications
Human hemoglobin (HbA) is one of the prototypal systems used to investigate structure–
function relationships in proteins. Indeed, HbA has been used to develop the basic concepts …

Role of the subunit interactions in the conformational transitions in adult human hemoglobin: an explicit solvent molecular dynamics study

OK Yusuff, JO Babalola, G Bussi… - The Journal of Physical …, 2012 - ACS Publications
Hemoglobin exhibits allosteric structural changes upon ligand binding due to the dynamic
interactions between the ligand binding sites, the amino acids residues and some other …

Free energy simulations of axial contacts in sickle‐cell hemoglobin

K Kuczera - Biopolymers, 1996 - Wiley Online Library
Molecular dynamics simulations have been used to investigate the thermodynamic stability
of axial contacts in sickle-cell hemoglobin (HbS). Free energy changes were evaluated for …