A complete telomere-to-telomere assembly of the maize genome
J Chen, Z Wang, K Tan, W Huang, J Shi, T Li, J Hu… - Nature …, 2023 - nature.com
A complete telomere-to-telomere (T2T) finished genome has been the long pursuit of
genomic research. Through generating deep coverage ultralong Oxford Nanopore …
genomic research. Through generating deep coverage ultralong Oxford Nanopore …
Gapless assembly of maize chromosomes using long-read technologies
Creating gapless telomere-to-telomere assemblies of complex genomes is one of the
ultimate challenges in genomics. We use two independent assemblies and an optical map …
ultimate challenges in genomics. We use two independent assemblies and an optical map …
Prospects of telomere‐to‐telomere assembly in barley: Analysis of sequence gaps in the MorexV3 reference genome
P Navrátilová, H Toegelová, Z Tulpová… - Plant biotechnology …, 2022 - Wiley Online Library
The first gapless, telomere‐to‐telomere (T2T) sequence assemblies of plant chromosomes
were reported recently. However, sequence assemblies of most plant genomes remain …
were reported recently. However, sequence assemblies of most plant genomes remain …
TRASH: tandem repeat annotation and structural hierarchy
P Wlodzimierz, M Hong, IR Henderson - Bioinformatics, 2023 - academic.oup.com
Motivation The advent of long-read DNA sequencing is allowing complete assembly of
highly repetitive genomic regions for the first time, including the megabase-scale satellite …
highly repetitive genomic regions for the first time, including the megabase-scale satellite …
The genetic and epigenetic landscape of the Arabidopsis centromeres
INTRODUCTION The centromeres of eukaryotic chromosomes assemble the multiprotein
kinetochore complex and thereby position attachment to the spindle microtubules, allowing …
kinetochore complex and thereby position attachment to the spindle microtubules, allowing …
Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome
PD Rabinowicz, K Schutz, N Dedhia, C Yordan… - Nature …, 1999 - nature.com
The genomes of higher plants and animals are highly differentiated, and are composed of a
relatively small number of genes and a large fraction of repetitive DNA. The bulk of this …
relatively small number of genes and a large fraction of repetitive DNA. The bulk of this …
Telomere-to-telomere assembly of diploid chromosomes with Verkko
Abstract The Telomere-to-Telomere consortium recently assembled the first truly complete
sequence of a human genome. To resolve the most complex repeats, this project relied on …
sequence of a human genome. To resolve the most complex repeats, this project relied on …
quarTeT: a telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
Y Lin, C Ye, X Li, Q Chen, Y Wu, F Zhang… - Horticulture …, 2023 - academic.oup.com
A high-quality genome is the basis for studies on functional, evolutionary, and comparative
genomics. The majority of attention has been paid to the solution of complex chromosome …
genomics. The majority of attention has been paid to the solution of complex chromosome …
Improved maize reference genome with single-molecule technologies
Complete and accurate reference genomes and annotations provide fundamental tools for
characterization of genetic and functional variation. These resources facilitate the …
characterization of genetic and functional variation. These resources facilitate the …
[HTML][HTML] Linear assembly of a human centromere on the Y chromosome
The human genome reference sequence remains incomplete owing to the challenge of
assembling long tracts of near-identical tandem repeats in centromeres. We implemented a …
assembling long tracts of near-identical tandem repeats in centromeres. We implemented a …