[HTML][HTML] The formation of chromatin domains involves a primary step based on the 3-D structure of DNA
G Bernardi - Scientific Reports, 2018 - nature.com
The general model presented here for the formation of chromatin domains, LADs and TADs,
is primarily based on the 3-D structures of the corresponding DNA sequences, the GC-poor …
is primarily based on the 3-D structures of the corresponding DNA sequences, the GC-poor …
[HTML][HTML] The short-sequence design of DNA and its involvement in the 3-D structure of the genome
G Lamolle, V Sabbia, H Musto, G Bernardi - Scientific Reports, 2018 - nature.com
Recent investigations have shown that isochores are characterized by a 3-D structure which
is primarily responsible for the topology of chromatin domains. More precisely, an analysis of …
is primarily responsible for the topology of chromatin domains. More precisely, an analysis of …
Biochemically distinct cohesin complexes mediate positioned loops between CTCF sites and dynamic loops within chromatin domains
The ring-like cohesin complex mediates sister chromatid cohesion by encircling pairs of
sister chromatids. Cohesin also extrudes loops along chromatids. Whether the two activities …
sister chromatids. Cohesin also extrudes loops along chromatids. Whether the two activities …
Chromatin loops stack up
D Clyde - Nature Reviews Genetics, 2023 - nature.com
Chromatin loops stack up | Nature Reviews Genetics Skip to main content Thank you for visiting
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nature.com. You are using a browser version with limited support for CSS. To obtain the best …
CTCF, WAPL and PDS5 proteins control the formation of TADs and loops by cohesin
G Wutz, C Varnai, K Nagasaka, DA Cisneros… - Biorxiv, 2017 - biorxiv.org
Mammalian genomes are organized into compartments, topologically-associating domains
(TADs) and loops to facilitate gene regulation and other chromosomal functions …
(TADs) and loops to facilitate gene regulation and other chromosomal functions …
Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins
Mammalian genomes are spatially organized into compartments, topologically associating
domains (TADs), and loops to facilitate gene regulation and other chromosomal functions …
domains (TADs), and loops to facilitate gene regulation and other chromosomal functions …
CTCF–CTCF loops and intra-TAD interactions show differential dependence on cohesin ring integrity
The ring-like cohesin complex mediates sister-chromatid cohesion by encircling pairs of
sister chromatids. Cohesin also extrudes loops along chromatids. Whether the two activities …
sister chromatids. Cohesin also extrudes loops along chromatids. Whether the two activities …
CTCF mediates chromatin looping via N-terminal domain-dependent cohesin retention
EM Pugacheva, N Kubo, D Loukinov… - Proceedings of the …, 2020 - National Acad Sciences
The DNA-binding protein CCCTC-binding factor (CTCF) and the cohesin complex function
together to shape chromatin architecture in mammalian cells, but the molecular details of …
together to shape chromatin architecture in mammalian cells, but the molecular details of …
Rapid depletion of CTCF and cohesin proteins reveals dynamic features of chromosome architecture
NQ Liu, M Magnitov, M Schijns, T van Schaik… - bioRxiv, 2021 - biorxiv.org
The interphase genome is mainly shaped by cohesin-mediated loop extrusion and cohesin-
independent compartmentalization. Extrusion is a dynamic process of cohesin loading, loop …
independent compartmentalization. Extrusion is a dynamic process of cohesin loading, loop …
[HTML][HTML] Cohesin and CTCF complexes mediate contacts in chromatin loops depending on nucleosome positions
A Attou, T Zülske, G Wedemann - Biophysical Journal, 2022 - cell.com
The spatial organization of the eukaryotic genome plays an important role in regulating
transcriptional activity. In the nucleus, chromatin forms loops that assemble into fundamental …
transcriptional activity. In the nucleus, chromatin forms loops that assemble into fundamental …