Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database

A Bissett, A Fitzgerald, T Meintjes, PM Mele, F Reith… - GigaScience, 2016 - Springer
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …

A genomic catalogue of soil microbiomes boosts mining of biodiversity and genetic resources

B Ma, C Lu, Y Wang, J Yu, K Zhao, R Xue… - Nature …, 2023 - nature.com
Soil harbors a vast expanse of unidentified microbes, termed as microbial dark matter,
presenting an untapped reservoir of microbial biodiversity and genetic resources, but has …

Back to the future of soil metagenomics

J Nesme, W Achouak, SN Agathos, M Bailey… - Frontiers in …, 2016 - frontiersin.org
Direct extraction and characterization of microbial community DNA through PCR amplicon
surveys and metagenomics has revolutionized the study of environmental microbiology and …

Microbial diversity and function in soil: from genes to ecosystems

V Torsvik, L Øvreås - Current opinion in microbiology, 2002 - Elsevier
Soils sustain an immense diversity of microbes, which, to a large extent, remains
unexplored. A range of novel methods, most of which are based on rRNA and rDNA …

The bacterial biogeography of British soils

RI Griffiths, BC Thomson, P James… - Environmental …, 2011 - Wiley Online Library
Despite recognition of the importance of soil bacteria to terrestrial ecosystem functioning
there is little consensus on the factors regulating belowground biodiversity. Here we present …

The known and the unknown in soil microbial ecology

P Baldrian - FEMS microbiology ecology, 2019 - academic.oup.com
The methodical developments in the fields of molecular biology and analytical chemistry
significantly increased the level of detail that we achieve when exploring soils and their …

Strategies to improve reference databases for soil microbiomes

J Choi, F Yang, R Stepanauskas, E Cardenas… - The ISME …, 2017 - academic.oup.com
Microbial populations in the soil are critical in our lives. The soil microbiome helps to grow
our food, nourishing and protecting plants, while also providing important ecological …

[HTML][HTML] Exploring research frontiers in microbiology: the challenge of metagenomics in soil microbiology

S Mocali, A Benedetti - Research in microbiology, 2010 - Elsevier
Soil is one of the most complex and challenging environments for microbiologists. In fact,
although it contains the largest microbial diversity on the planet, the majority of these …

Accessing the soil metagenome for studies of microbial diversity

TO Delmont, P Robe, S Cecillon, IM Clark… - Applied and …, 2011 - Am Soc Microbiol
Soil microbial communities contain the highest level of prokaryotic diversity of any
environment, and metagenomic approaches involving the extraction of DNA from soil can …

Soil properties drive microbial community structure in a large scale transect in South Eastern Australia

PP Xue, Y Carrillo, V Pino, B Minasny, AB McBratney - Scientific reports, 2018 - nature.com
Soil microbial communities directly affect soil functionality through their roles in the cycling of
soil nutrients and carbon storage. Microbial communities vary substantially in space and …