Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination

R Narsai, Q Gouil, D Secco, A Srivastava… - Genome biology, 2017 - Springer
Background Seed germination involves progression from complete metabolic dormancy to a
highly active, growing seedling. Many factors regulate germination and these interact …

Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination

BJW Dekkers, S Pearce… - Plant …, 2013 - academic.oup.com
Seed germination is a critical stage in the plant life cycle and the first step toward successful
plant establishment. Therefore, understanding germination is of important ecological and …

In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for …

R Narsai, SR Law, C Carrie, L Xu, J Whelan - Plant physiology, 2011 - academic.oup.com
Germination represents a rapid transition from dormancy to a high level of metabolic activity.
In-depth transcriptomic profiling at 10 time points in Arabidopsis (Arabidopsis thaliana) …

Extensive translational regulation during seed germination revealed by polysomal profiling

B Bai, A Peviani, S van der Horst, M Gamm… - New …, 2017 - Wiley Online Library
This work investigates the extent of translational regulation during seed germination. The
polysome occupancy of each gene is determined by genome‐wide profiling of total mRNA …

Post-genomics dissection of seed dormancy and germination

MJ Holdsworth, WE Finch-Savage, P Grappin… - Trends in plant …, 2008 - cell.com
Studies of genome expression in Arabidopsis have provided important new information
about mechanisms controlling germination and suggest new avenues to explore …

Elucidating the germination transcriptional program using small molecules

GW Bassel, P Fung, TF Chow, JA Foong… - Plant …, 2008 - academic.oup.com
The transition from seed to seedling is mediated by germination, a complex process that
starts with imbibition and completes with radicle emergence. To gain insight into the …

Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions

GW Bassel, H Lan, E Glaab, DJ Gibbs… - Proceedings of the …, 2011 - National Acad Sciences
Seed germination is a complex trait of key ecological and agronomic significance. Few
genetic factors regulating germination have been identified, and the means by which their …

[HTML][HTML] Transcriptome-and proteome-wide analyses of seed germination

J Catusse, C Job, D Job - Comptes …, 2008 - comptes-rendus.academie-sciences …
Using post-genomic technologies, it is now possible to understand the molecular basis of
complex developmental processes. In the case of seed germination, recent transcriptome …

Genome‐wide profiling of stored mRNA in Arabidopsis thaliana seed germination: epigenetic and genetic regulation of transcription in seed

K Nakabayashi, M Okamoto, T Koshiba… - The plant …, 2005 - Wiley Online Library
To reveal the transcriptomes of Arabidopsis seed, comprehensive expression analysis was
performed using ATH1 GeneChips (Affymetrix, Santa Clara, CA, USA). In the dry seed, more …

Functional genomics in the study of seed germination

J Bove, M Jullien, P Grappin - Genome Biology, 2001 - Springer
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