[HTML][HTML] The diploid genome sequence of an individual human

S Levy, G Sutton, PC Ng, L Feuk, AL Halpern… - PLoS …, 2007 - journals.plos.org
Presented here is a genome sequence of an individual human. It was produced from∼ 32
million random DNA fragments, sequenced by Sanger dideoxy technology and assembled …

Sequencing of isolated sperm cells for direct haplotyping of a human genome

EF Kirkness, RV Grindberg, J Yee-Greenbaum… - Genome …, 2013 - genome.cshlp.org
There is increasing evidence that the phenotypic effects of genomic sequence variants are
best understood in terms of variant haplotypes rather than as isolated polymorphisms …

Direct determination of diploid genome sequences

NI Weisenfeld, V Kumar, P Shah, DM Church… - Genome …, 2017 - genome.cshlp.org
Determining the genome sequence of an organism is challenging, yet fundamental to
understanding its biology. Over the past decade, thousands of human genomes have been …

[HTML][HTML] The diploid genome sequence of an Asian individual

J Wang, W Wang, R Li, Y Li, G Tian, L Goodman… - Nature, 2008 - nature.com
Here we present the first diploid genome sequence of an Asian individual. The genome was
sequenced to 36-fold average coverage using massively parallel sequencing technology …

[HTML][HTML] Modernizing reference genome assemblies

DM Church, VA Schneider, T Graves, K Auger… - PLoS …, 2011 - journals.plos.org
The availability of a high quality human genome assembly has revolutionized biomedical
research. Genomics has now entered the realm of clinical genetics, with many groups using …

De novo assembly of a haplotype-resolved human genome

H Cao, H Wu, R Luo, S Huang, Y Sun, X Tong… - Nature …, 2015 - nature.com
The human genome is diploid, and knowledge of the variants on each chromosome is
important for the interpretation of genomic information. Here we report the assembly of a …

Assembly and diploid architecture of an individual human genome via single-molecule technologies

M Pendleton, R Sebra, AWC Pang, A Ummat… - Nature …, 2015 - nature.com
We present the first comprehensive analysis of a diploid human genome that combines
single-molecule sequencing with single-molecule genome maps. Our hybrid assembly …

Discovery and genotyping of structural variation from long-read haploid genome sequence data

J Huddleston, MJP Chaisson, KM Steinberg… - Genome …, 2017 - genome.cshlp.org
In an effort to more fully understand the full spectrum of human genetic variation, we
generated deep single-molecule, real-time (SMRT) sequencing data from two haploid …

Personal genome sequencing: current approaches and challenges

M Snyder, J Du, M Gerstein - Genes & development, 2010 - genesdev.cshlp.org
The revolution in DNA sequencing technologies has now made it feasible to determine the
genome sequences of many individuals; ie,“personal genomes.” Genome sequences of …

[HTML][HTML] Dense and accurate whole-chromosome haplotyping of individual genomes

D Porubsky, S Garg, AD Sanders, JO Korbel… - Nature …, 2017 - nature.com
The diploid nature of the human genome is neglected in many analyses done today, where
a genome is perceived as a set of unphased variants with respect to a reference genome …