Controlling ribozyme activity by metal ions

J Schnabl, RKO Sigel - Current opinion in chemical biology, 2010 - Elsevier
The observed rates of ribozyme cleavage reactions are strongly dependent on the nature of
the metal ion present. Metal ions can thereby exhibit a stronger inhibiting or accelerating …

Survey and summary: recent advances in the elucidation of the mechanisms of action of ribozymes

Y Takagi, M Warashina, WJ Stec… - Nucleic acids …, 2001 - academic.oup.com
The cleavage of RNA can be accelerated by a number of factors. These factors include an
acidic group (Lewis acid) or a basic group that aids in the deprotonation of the attacking …

A two-metal ion mechanism operates in the hammerhead ribozyme-mediated cleavage of an RNA substrate

WB Lott, BW Pontius… - Proceedings of the …, 1998 - National Acad Sciences
Evidence for a two-metal ion mechanism for cleavage of the HH16 hammerhead ribozyme is
provided by monitoring the rate of cleavage of the RNA substrate as a function of La3+ …

Activities and relative affinities of divalent metals in unmodified and phosphorothioate-substituted hammerhead ribozymes

LM Hunsicker, VJ DeRose - Journal of inorganic biochemistry, 2000 - Elsevier
The roles of metals in the phosphodiester bond cleavage reaction performed by the
hammerhead ribozyme are under investigation. In this study, the apparent affinities and the …

Divalent metal ions and the internal equilibrium of the hammerhead ribozyme

DM Long, FJ LaRiviere, OC Uhlenbeck - Biochemistry, 1995 - ACS Publications
Revised Manuscript Received September 5, 1995® abstract: Thermodynamics of RNA
cleavage/ligation were measured for a self-cleaving hammerhead ribozyme in the presence …

The hammerhead cleavage reaction in monovalent cations

EA Curtis, DP Bartel - Rna, 2001 - cambridge.org
Recently, Murray et al.(Chem Biol, 1998, 5: 587–595) found that the hammerhead ribozyme
does not require divalent metal ions for activity if incubated in high (≥ 1 M) concentrations of …

Alternative roles for metal ions in enzyme catalysis and the implications for ribozyme chemistry

RKO Sigel, AM Pyle - Chemical reviews, 2007 - ACS Publications
Ribozymes can catalyze a large variety of different reactions, but very few mechanistic
aspects are understood in detail. 1-9 It is evident that RNAs are always associated with …

Multiple roles of metal ions in large ribozymes

D Donghi, J Schnabl - 2011 - books.rsc.org
Since the discovery of catalytic RNA molecules (ribozymes), intense research has been
devoted to understand their structure and activity. Among RNA molecules, the large …

Comparison of the hammerhead cleavage reactions stimulated by monovalent and divalent cations

JL O'REAR, S Wang, AL Feig, L Beigelman… - Rna, 2001 - cambridge.org
Although the hammerhead reaction proceeds most efficiently in divalent cations, cleavage in
4 M LiCl is only∼ 10-fold slower than under standard conditions of 10 mM MgCl2 (Murray et …

[PDF][PDF] Probing the binding of Tb (III) and Eu (III) to the hammerhead ribozyme using luminescence spectroscopy

AL Feig, M Panek, WDW Horrocks, OC Uhlenbeck - Chemistry & biology, 1999 - cell.com
Background: Divalent metal ions serve as structural as well as catalytic cofactors in the
hammerhead ribozyme reaction. The natural cofactor in these reactions is Mg (II), but its …