Bayesian genomic prediction with genotype× environment interaction kernel models

J Cuevas, J Crossa… - G3: Genes …, 2017 - academic.oup.com
The phenomenon of genotype× environment (G× E) interaction in plant breeding decreases
selection accuracy, thereby negatively affecting genetic gains. Several genomic prediction …

Genomic prediction of genotype× environment interaction kernel regression models

J Cuevas, J Crossa, V Soberanis… - The plant …, 2016 - Wiley Online Library
In genomic selection (GS), genotype× environment interaction (G× E) can be modeled by a
marker× environment interaction (M× E). The G× E may be modeled through a linear kernel …

[HTML][HTML] Selection of the bandwidth parameter in a Bayesian kernel regression model for genomic-enabled prediction

S Pérez-Elizalde, J Cuevas, P Pérez-Rodríguez… - Journal of agricultural …, 2015 - Springer
One of the most widely used kernel functions in genomic-enabled prediction is the Gaussian
kernel. Selection of the bandwidth parameter for kernel regression has generally been …

BGGE: a new package for genomic-enabled prediction incorporating genotype× environment interaction models

I Granato, J Cuevas, F Luna-Vázquez… - G3: Genes …, 2018 - academic.oup.com
One of the major issues in plant breeding is the occurrence of genotype× environment (GE)
interaction. Several models have been created to understand this phenomenon and explore …

Genomic-enabled prediction in maize using kernel models with genotype× environment interaction

M Bandeira e Sousa, J Cuevas… - G3: Genes …, 2017 - academic.oup.com
Multi-environment trials are routinely conducted in plant breeding to select candidates for
the next selection cycle. In this study, we compare the prediction accuracy of four developed …

Genomic prediction of breeding values when modeling genotype× environment interaction using pedigree and dense molecular markers

J Burgueño, G de los Campos, K Weigel… - Crop Science, 2012 - Wiley Online Library
Genomic selection (GS) has become an important aid in plant and animal breeding.
Multienvironment (multitrait) models allow borrowing of information across environments …

An R package for Bayesian analysis of multi-environment and multi-trait multi-environment data for genome-based prediction

OA Montesinos-López… - G3: Genes …, 2019 - academic.oup.com
Evidence that genomic selection (GS) is a technology that is revolutionizing plant breeding
continues to grow. However, it is very well documented that its success strongly depends on …

A genomic Bayesian multi-trait and multi-environment model

OA Montesinos-López… - G3: Genes …, 2016 - academic.oup.com
When information on multiple genotypes evaluated in multiple environments is recorded, a
multi-environment single trait model for assessing genotype× environment interaction (G× E) …

Increased prediction accuracy in wheat breeding trials using a marker× environment interaction genomic selection model

M Lopez-Cruz, J Crossa, D Bonnett… - G3: Genes …, 2015 - academic.oup.com
Genomic selection (GS) models use genome-wide genetic information to predict genetic
values of candidates of selection. Originally, these models were developed without …

Genomic-enabled prediction kernel models with random intercepts for multi-environment trials

J Cuevas, I Granato, R Fritsche-Neto… - G3: Genes …, 2018 - academic.oup.com
In this study, we compared the prediction accuracy of the main genotypic effect model (MM)
without G× E interactions, the multi-environment single variance G× E deviation model …