Spatial proteomics: a powerful discovery tool for cell biology

E Lundberg, GHH Borner - Nature Reviews Molecular Cell Biology, 2019 - nature.com
Protein subcellular localization is tightly controlled and intimately linked to protein function in
health and disease. Capturing the spatial proteome—that is, the localizations of proteins and …

Subcellular proteomics

JA Christopher, C Stadler, CE Martin… - Nature Reviews …, 2021 - nature.com
The eukaryotic cell is compartmentalized into subcellular niches, including membrane-
bound and membrane-less organelles. Proteins localize to these niches to fulfil their …

Application of machine learning in spatial proteomics

M Mou, Z Pan, M Lu, H Sun, Y Wang… - Journal of Chemical …, 2022 - ACS Publications
Spatial proteomics is an interdisciplinary field that investigates the localization and dynamics
of proteins, and it has gained extensive attention in recent years, especially the subcellular …

SubCellBarCode: proteome-wide mapping of protein localization and relocalization

LM Orre, M Vesterlund, Y Pan, T Arslan, Y Zhu… - Molecular cell, 2019 - cell.com
Subcellular localization is a main determinant of protein function; however, a global view of
cellular proteome organization remains relatively unexplored. We have developed a robust …

Global, quantitative and dynamic mapping of protein subcellular localization

DN Itzhak, S Tyanova, J Cox, GHH Borner - elife, 2016 - elifesciences.org
Subcellular localization critically influences protein function, and cells control protein
localization to regulate biological processes. We have developed and applied Dynamic …

Mass-spectrometry-based spatial proteomics data analysis using pRoloc and pRolocdata

L Gatto, LM Breckels, S Wieczorek, T Burger… - …, 2014 - academic.oup.com
Motivation: Experimental spatial proteomics, ie the high-throughput assignment of proteins
to sub-cellular compartments based on quantitative proteomics data, promises to shed new …

Toward a confocal subcellular atlas of the human proteome

L Barbe, E Lundberg, P Oksvold, A Stenius… - Molecular & Cellular …, 2008 - ASBMB
Information on protein localization on the subcellular level is important to map and
characterize the proteome and to better understand cellular functions of proteins. Here we …

The human protein atlas—spatial localization of the human proteome in health and disease

A Digre, C Lindskog - Protein Science, 2021 - Wiley Online Library
For a complete understanding of a system's processes and each protein's role in health and
disease, it is essential to study protein expression with a spatial resolution, as the exact …

Integration of whole transcriptome spatial profiling with protein markers

N Ben-Chetrit, X Niu, AD Swett, J Sotelo, MS Jiao… - Nature …, 2023 - nature.com
Spatial transcriptomics and proteomics provide complementary information that
independently transformed our understanding of complex biological processes. However …

Proximity‐dependent labeling methods for proteomic profiling in living cells: An update

JA Bosch, CL Chen, N Perrimon - Wiley Interdisciplinary …, 2021 - Wiley Online Library
Characterizing the proteome composition of organelles and subcellular regions of living
cells can facilitate the understanding of cellular organization as well as protein interactome …