Spatial proteomics: a powerful discovery tool for cell biology
E Lundberg, GHH Borner - Nature Reviews Molecular Cell Biology, 2019 - nature.com
Protein subcellular localization is tightly controlled and intimately linked to protein function in
health and disease. Capturing the spatial proteome—that is, the localizations of proteins and …
health and disease. Capturing the spatial proteome—that is, the localizations of proteins and …
Application of machine learning in spatial proteomics
Spatial proteomics is an interdisciplinary field that investigates the localization and dynamics
of proteins, and it has gained extensive attention in recent years, especially the subcellular …
of proteins, and it has gained extensive attention in recent years, especially the subcellular …
SubCellBarCode: proteome-wide mapping of protein localization and relocalization
Subcellular localization is a main determinant of protein function; however, a global view of
cellular proteome organization remains relatively unexplored. We have developed a robust …
cellular proteome organization remains relatively unexplored. We have developed a robust …
Global, quantitative and dynamic mapping of protein subcellular localization
Subcellular localization critically influences protein function, and cells control protein
localization to regulate biological processes. We have developed and applied Dynamic …
localization to regulate biological processes. We have developed and applied Dynamic …
Mass-spectrometry-based spatial proteomics data analysis using pRoloc and pRolocdata
Motivation: Experimental spatial proteomics, ie the high-throughput assignment of proteins
to sub-cellular compartments based on quantitative proteomics data, promises to shed new …
to sub-cellular compartments based on quantitative proteomics data, promises to shed new …
Toward a confocal subcellular atlas of the human proteome
Information on protein localization on the subcellular level is important to map and
characterize the proteome and to better understand cellular functions of proteins. Here we …
characterize the proteome and to better understand cellular functions of proteins. Here we …
The human protein atlas—spatial localization of the human proteome in health and disease
A Digre, C Lindskog - Protein Science, 2021 - Wiley Online Library
For a complete understanding of a system's processes and each protein's role in health and
disease, it is essential to study protein expression with a spatial resolution, as the exact …
disease, it is essential to study protein expression with a spatial resolution, as the exact …
Integration of whole transcriptome spatial profiling with protein markers
Spatial transcriptomics and proteomics provide complementary information that
independently transformed our understanding of complex biological processes. However …
independently transformed our understanding of complex biological processes. However …
Proximity‐dependent labeling methods for proteomic profiling in living cells: An update
JA Bosch, CL Chen, N Perrimon - Wiley Interdisciplinary …, 2021 - Wiley Online Library
Characterizing the proteome composition of organelles and subcellular regions of living
cells can facilitate the understanding of cellular organization as well as protein interactome …
cells can facilitate the understanding of cellular organization as well as protein interactome …