Benchmarking functional connectome-based predictive models for resting-state fMRI

K Dadi, M Rahim, A Abraham, D Chyzhyk, M Milham… - NeuroImage, 2019 - Elsevier
Functional connectomes reveal biomarkers of individual psychological or clinical traits.
However, there is great variability in the analytic pipelines typically used to derive them from …

The connectivity domain: Analyzing resting state fMRI data using feature-based data-driven and model-based methods

A Iraji, VD Calhoun, NM Wiseman, E Davoodi-Bojd… - Neuroimage, 2016 - Elsevier
Spontaneous fluctuations of resting state functional MRI (rsfMRI) have been widely used to
understand the macro-connectome of the human brain. However, these fluctuations are not …

Boost in test–retest reliability in resting state fMRI with predictive modeling

A Taxali, M Angstadt, S Rutherford, C Sripada - Cerebral cortex, 2021 - academic.oup.com
Recent studies found low test–retest reliability in functional magnetic resonance imaging
(fMRI), raising serious concerns among researchers, but these studies mostly focused on the …

Ensemble learning with 3D convolutional neural networks for functional connectome-based prediction

M Khosla, K Jamison, A Kuceyeski, MR Sabuncu - NeuroImage, 2019 - Elsevier
The specificity and sensitivity of resting state functional MRI (rs-fMRI) measurements depend
on preprocessing choices, such as the parcellation scheme used to define regions of …

Resting-state fMRI in the human connectome project

SM Smith, CF Beckmann, J Andersson, EJ Auerbach… - Neuroimage, 2013 - Elsevier
Resting-state functional magnetic resonance imaging (rfMRI) allows one to study functional
connectivity in the brain by acquiring fMRI data while subjects lie inactive in the MRI …

Clinical applications of the functional connectome

FX Castellanos, A Di Martino, RC Craddock, AD Mehta… - Neuroimage, 2013 - Elsevier
Central to the development of clinical applications of functional connectomics for neurology
and psychiatry is the discovery and validation of biomarkers. Resting state fMRI (R-fMRI) is …

Connectotyping: model based fingerprinting of the functional connectome

O Miranda-Dominguez, BD Mills, SD Carpenter… - PloS one, 2014 - journals.plos.org
A better characterization of how an individual's brain is functionally organized will likely
bring dramatic advances to many fields of study. Here we show a model-based approach …

[HTML][HTML] Advances in resting state fMRI acquisitions for functional connectomics

L Raimondo, J Heij, N Priovoulos, P Kundu, RF Leoni… - NeuroImage, 2021 - Elsevier
Resting state functional magnetic resonance imaging (rs-fMRI) is based on spontaneous
fluctuations in the blood oxygen level dependent (BOLD) signal, which occur simultaneously …

Regression dynamic causal modeling for resting‐state fMRI

S Frässle, SJ Harrison, J Heinzle… - Human brain …, 2021 - Wiley Online Library
Abstract “Resting‐state” functional magnetic resonance imaging (rs‐fMRI) is widely used to
study brain connectivity. So far, researchers have been restricted to measures of functional …

[HTML][HTML] Representation learning of resting state fMRI with variational autoencoder

JH Kim, Y Zhang, K Han, Z Wen, M Choi, Z Liu - NeuroImage, 2021 - Elsevier
Resting state functional magnetic resonance imaging (rsfMRI) data exhibits complex but
structured patterns. However, the underlying origins are unclear and entangled in rsfMRI …