[HTML][HTML] MoleculeNet: a benchmark for molecular machine learning
Molecular machine learning has been maturing rapidly over the last few years. Improved
methods and the presence of larger datasets have enabled machine learning algorithms to …
methods and the presence of larger datasets have enabled machine learning algorithms to …
A systematic survey of chemical pre-trained models
Deep learning has achieved remarkable success in learning representations for molecules,
which is crucial for various biochemical applications, ranging from property prediction to …
which is crucial for various biochemical applications, ranging from property prediction to …
[HTML][HTML] Retrospective on a decade of machine learning for chemical discovery
OA von Lilienfeld, K Burke - Nature communications, 2020 - nature.com
Standfirst Over the last decade, we have witnessed the emergence of ever more machine
learning applications in all aspects of the chemical sciences. Here, we highlight specific …
learning applications in all aspects of the chemical sciences. Here, we highlight specific …
ChemBERTa: large-scale self-supervised pretraining for molecular property prediction
GNNs and chemical fingerprints are the predominant approaches to representing molecules
for property prediction. However, in NLP, transformers have become the de-facto standard …
for property prediction. However, in NLP, transformers have become the de-facto standard …
Molecular contrastive learning of representations via graph neural networks
Molecular machine learning bears promise for efficient molecular property prediction and
drug discovery. However, labelled molecule data can be expensive and time consuming to …
drug discovery. However, labelled molecule data can be expensive and time consuming to …
Graseq: graph and sequence fusion learning for molecular property prediction
With the recent advancement of deep learning, molecular representation learning--
automating the discovery of feature representation of molecular structure, has attracted …
automating the discovery of feature representation of molecular structure, has attracted …
Understanding the limitations of deep models for molecular property prediction: Insights and solutions
Abstract Molecular Property Prediction (MPP) is a crucial task in the AI-driven Drug
Discovery (AIDD) pipeline, which has recently gained considerable attention thanks to …
Discovery (AIDD) pipeline, which has recently gained considerable attention thanks to …
Chemical-reaction-aware molecule representation learning
Molecule representation learning (MRL) methods aim to embed molecules into a real vector
space. However, existing SMILES-based (Simplified Molecular-Input Line-Entry System) or …
space. However, existing SMILES-based (Simplified Molecular-Input Line-Entry System) or …
A review of molecular representation in the age of machine learning
DS Wigh, JM Goodman… - Wiley Interdisciplinary …, 2022 - Wiley Online Library
Research in chemistry increasingly requires interdisciplinary work prompted by, among
other things, advances in computing, machine learning, and artificial intelligence. Everyone …
other things, advances in computing, machine learning, and artificial intelligence. Everyone …
[HTML][HTML] Learning continuous and data-driven molecular descriptors by translating equivalent chemical representations
There has been a recent surge of interest in using machine learning across chemical space
in order to predict properties of molecules or design molecules and materials with the …
in order to predict properties of molecules or design molecules and materials with the …