DEG 10, an update of the database of essential genes that includes both protein-coding genes and noncoding genomic elements

H Luo, Y Lin, F Gao, CT Zhang… - Nucleic acids research, 2014 - academic.oup.com
The combination of high-density transposon-mediated mutagenesis and high-throughput
sequencing has led to significant advancements in research on essential genes, resulting in …

DEG 15, an update of the Database of Essential Genes that includes built-in analysis tools

H Luo, Y Lin, T Liu, FL Lai, CT Zhang… - Nucleic acids …, 2021 - academic.oup.com
Essential genes refer to genes that are required by an organism to survive under specific
conditions. Studies of the minimal-gene-set for bacteria have elucidated fundamental …

DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes

R Zhang, Y Lin - Nucleic acids research, 2009 - academic.oup.com
Essential genes are those indispensable for the survival of an organism, and their functions
are therefore considered a foundation of life. Determination of a minimal gene set needed to …

DEG: a database of essential genes

R Zhang, HY Ou, CT Zhang - Nucleic acids research, 2004 - academic.oup.com
Essential genes are genes that are indispensable to support cellular life. These genes
constitute a minimal gene set required for a living cell. We have constructed a Database of …

Towards the identification of essential genes using targeted genome sequencing and comparative analysis

AM Gustafson, ES Snitkin, SCJ Parker, C DeLisi… - Bmc Genomics, 2006 - Springer
Background The identification of genes essential for survival is of theoretical importance in
the understanding of the minimal requirements for cellular life, and of practical importance in …

Are essential genes really essential?

MA D'Elia, MP Pereira, ED Brown - Trends in microbiology, 2009 - cell.com
Gene essentiality has emerged as an often-asked question in the wake of bacterial genome
sequencing and a renaissance in studies of prokaryotic physiology. Genome-scale efforts at …

Investigating the predictability of essential genes across distantly related organisms using an integrative approach

J Deng, L Deng, S Su, M Zhang, X Lin… - Nucleic acids …, 2011 - academic.oup.com
Rapid and accurate identification of new essential genes in under-studied microorganisms
will significantly improve our understanding of how a cell works and the ability to re-engineer …

Essential genes on metabolic maps

S Gerdes, R Edwards, M Kubal, M Fonstein… - Current opinion in …, 2006 - Elsevier
Within the past five years genome-scale gene essentiality data sets have been published for
ten diverse bacterial species. These data are a rich source of information about cellular …

Emerging and evolving concepts in gene essentiality

G Rancati, J Moffat, A Typas, N Pavelka - Nature Reviews Genetics, 2018 - nature.com
Gene essentiality is a founding concept of genetics with important implications in both
fundamental and applied research. Multiple screens have been performed over the years in …

OGEE v2: an update of the online gene essentiality database with special focus on differentially essential genes in human cancer cell lines

WH Chen, G Lu, X Chen, XM Zhao… - Nucleic acids …, 2016 - academic.oup.com
OGEE is an Online GEne Essentiality database. To enhance our understanding of the
essentiality of genes, in OGEE we collected experimentally tested essential and non …