Using Genome Sequence Data to Predict SARS-CoV-2 Detection Cycle Threshold Values
The continuing emergence of SARS-CoV-2 variants of concern (VOCs) presents a serious
public health threat, exacerbating the effects of the COVID19 pandemic. Although millions of …
public health threat, exacerbating the effects of the COVID19 pandemic. Although millions of …
SARS-CoV-2 genome-based severity predictions correspond to lower qPCR values and higher viral load
M Skarzynski, EM McAuley, EJ Maier… - Global Health …, 2022 - cambridge.org
The 2019 coronavirus disease (COVID-19) pandemic has demonstrated the importance of
predicting, identifying, and tracking mutations throughout a pandemic event. As the COVID …
predicting, identifying, and tracking mutations throughout a pandemic event. As the COVID …
IPD 2.0: To derive insights from an evolving SARS-CoV-2 genome
Background Rapid analysis of SARS-CoV-2 genomic data plays a crucial role in
surveillance and adoption of measures in controlling spread of Covid-19. Fast, inclusive and …
surveillance and adoption of measures in controlling spread of Covid-19. Fast, inclusive and …
Phylogenomic early warning signals for SARS-CoV-2 epidemic waves
Background Epidemic waves of coronavirus disease 2019 (COVID-19) infections have often
been associated with the emergence of novel severe acute respiratory syndrome …
been associated with the emergence of novel severe acute respiratory syndrome …
Machine learning-based approach KEVOLVE efficiently identifies SARS-CoV-2 variant-specific genomic signatures
Machine learning was shown to be effective at identifying distinctive genomic signatures
among viral sequences. These signatures are defined as pervasive motifs in the viral …
among viral sequences. These signatures are defined as pervasive motifs in the viral …
Enhanced deep convolutional neural network for sars-cov-2 variants classification
OI Awe, hesborn omwandho obura, MJ Mwanga… - bioRxiv, 2023 - biorxiv.org
High-throughput sequencing techniques and sequence analysis have enabled the
taxonomic classification of pathogens present in clinical samples. Sequencing provides an …
taxonomic classification of pathogens present in clinical samples. Sequencing provides an …
A multiplex PCR assay for identifying all major SARS-CoV-2 variants
RJ Dikdan, SAE Marras, AP Field, A Brownlee, A Cironi… - medRxiv, 2021 - medrxiv.org
Variants of Concern (VOC) of SARS-CoV-2, including Alpha, Beta, Gamma, and Delta,
threaten to prolong the pandemic leading to more global morbidity and mortality. Genome …
threaten to prolong the pandemic leading to more global morbidity and mortality. Genome …
A multi-class gene classifier for SARS-CoV-2 variants based on convolutional neural network
J Fan, C Chen, C Song, J Pan, G Wu - bioRxiv, 2021 - biorxiv.org
Surveillance of circulating variants of severe acute respiratory syndrome coronavirus 2
(SARS-CoV-2) is of great importance in controlling the coronavirus disease 2019 (COVID …
(SARS-CoV-2) is of great importance in controlling the coronavirus disease 2019 (COVID …
Guidelines for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples
Background SARS-CoV-2 genotyping has been instrumental to monitor virus evolution and
transmission during the pandemic. The reliability of the information extracted from the …
transmission during the pandemic. The reliability of the information extracted from the …
RCoV19: a one-stop hub for SARS-CoV-2 genome data integration, variant monitoring, and risk pre-warning
C Li, L Ma, D Zou, R Zhang, X Bai, L Li… - Genomics …, 2023 - academic.oup.com
Abstract The Resource for Coronavirus 2019 (RCoV19) is an open-access information
resource dedicated to providing valuable data on the genomes, mutations, and variants of …
resource dedicated to providing valuable data on the genomes, mutations, and variants of …